PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Mapoly0043s0098.1.p
Organism
Marchantia polymorpha
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Marchantiophyta; Marchantiopsida; Marchantiidae; Marchantiales; Marchantiaceae; Marchantia
Family ARF
Protein Properties Length: 740aa    MW: 77773.8 Da    PI: 7.226
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Mapoly0043s0098.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B372.94e-23160261199
                          EEEE-..-HHHHTT-EE--HHH.HTT......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE CS
                   B3   1 ffkvltpsdvlksgrlvlpkkfaeeh......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkl 84 
                          f k+lt+sd+++ g +++p+ +ae++      +++++  +t+  +d +g++W++++iyr++++r++lt+GW+ Fv++++L +gD +vF  
  Mapoly0043s0098.1.p 160 FAKTLTQSDANNGGGFSVPRYCAETIfppldySIDPPV-QTVLAKDVHGERWKFRHIYRGTPRRHLLTTGWSTFVNQKKLVAGDAIVFL- 247
                          89****************************99555554.49************************************************. PP

                          -SSSEE..EEEEE-S CS
                   B3  85 dgrsefelvvkvfrk 99 
                           ++ ++el+v+v+r+
  Mapoly0043s0098.1.p 248 -RTASGELCVGVRRS 261
                          .458999*****985 PP
2Auxin_resp102.64.9e-34361443183
           Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrl.sGtvvgvsdldpvrWpnSkWrsLk 83 
                          aa+ a ++++FevvY+Prast+eF+vk++ v++al++ + +GmRfkmafetedss++++ +Gt+++v+ +d+  Wp+S+Wr+L+
  Mapoly0043s0098.1.p 361 AASLAVQGQPFEVVYYPRASTAEFCVKAQAVKAALDHTWFPGMRFKMAFETEDSSRISWfMGTISAVQPADS-LWPKSPWRVLQ 443
                          6778899**************************************************************999.9********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.102.4E-36152271IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019363.66E-30156272IPR015300DNA-binding pseudobarrel domain
CDDcd100171.46E-20159260No hitNo description
SMARTSM010192.9E-19160262IPR003340B3 DNA binding domain
PfamPF023626.9E-21160261IPR003340B3 DNA binding domain
PROSITE profilePS5086312.675160262IPR003340B3 DNA binding domain
PfamPF065071.0E-29361443IPR010525Auxin response factor
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0007389Biological Processpattern specification process
GO:0009734Biological Processauxin-activated signaling pathway
GO:0048829Biological Processroot cap development
GO:0051301Biological Processcell division
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 740 aa     Download sequence    Send to blast
MPGPSPGCGT MSGTNIKMEK SEESMGGGGK GWGGGRDRDS SSDGGGGSGE NTGLDPQLWH  60
ACAGGMVQLP PVGAKVIYFP QGHGEQAATP PEFPRMMGPQ GTIGCRVVSV SFLADTETDE  120
VYARIRLQPL EREAAMSIAD STLDADGGPS SPPPEKPASF AKTLTQSDAN NGGGFSVPRY  180
CAETIFPPLD YSIDPPVQTV LAKDVHGERW KFRHIYRGTP RRHLLTTGWS TFVNQKKLVA  240
GDAIVFLRTA SGELCVGVRR SMRGTGGADS STWSGGSSTS HHRPNRWEVK GTESFSDFLG  300
NDSAAGGGSV SSAGSAAGPG GPRAGPGGSN SGPGIGIPGP STTSSFARNR ARVTAQSVLE  360
AASLAVQGQP FEVVYYPRAS TAEFCVKAQA VKAALDHTWF PGMRFKMAFE TEDSSRISWF  420
MGTISAVQPA DSLWPKSPWR VLQVTWDEPD LLQGVSRVSP WQVELVSTLP MQLPPFSLPK  480
KKLRAAQPSD MNMQGQGLMG MPITLPSVFG QINPWAHGLT MEEVTAGMQG ARHDRVFGLA  540
LSEKFRPGKL PGGFFSAAEG YYPDHAGRGG GGEPHLSAFP LQDRASNISS LISSLGSVPP  600
SGDHGSAGAL LVPAGSWSGG SANNKSASTQ LVLFGQAINT DSNKSQPQHS GGSSCDGPSL  660
QHLKEESSGK RKDSPSESNQ NENFERGQKY MSGSLSNGKQ SDLIVGEFQK WVPGLDKERG  720
AGEKLAASPE ILQSPQGAW*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldu_A2e-565446451388Auxin response factor 5
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
12734GGKGWGGG
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00461DAPTransfer from AT4G30080Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMap-Retrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKP8779710.0KP877971.1 Marchantia polymorpha auxin response factor 3 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024372940.10.0auxin response factor 10-like isoform X1
RefseqXP_024372941.10.0auxin response factor 10-like isoform X1
SwissprotQ653H71e-166ARFR_ORYSJ; Auxin response factor 18
TrEMBLA0A0G3FJH30.0A0A0G3FJH3_MARPO; Auxin response factor
STRINGPP1S339_47V6.10.0(Physcomitrella patens)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP5261578
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G28350.12e-92auxin response factor 10
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Flores-Sandoval E,Eklund DM,Bowman JL
    A Simple Auxin Transcriptional Response System Regulates Multiple Morphogenetic Processes in the Liverwort Marchantia polymorpha.
    PLoS Genet., 2015. 11(5): p. e1005207
    [PMID:26020649]
  3. Eklund DM, et al.
    Auxin Produced by the Indole-3-Pyruvic Acid Pathway Regulates Development and Gemmae Dormancy in the Liverwort Marchantia polymorpha.
    Plant Cell, 2015. 27(6): p. 1650-69
    [PMID:26036256]
  4. Huang J,Li Z,Zhao D
    Deregulation of the OsmiR160 Target Gene OsARF18 Causes Growth and Developmental Defects with an Alteration of Auxin Signaling in Rice.
    Sci Rep, 2016. 6: p. 29938
    [PMID:27444058]