PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Mapoly0046s0060.1.p
Organism
Marchantia polymorpha
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Marchantiophyta; Marchantiopsida; Marchantiidae; Marchantiales; Marchantiaceae; Marchantia
Family LBD
Protein Properties Length: 204aa    MW: 22985.4 Da    PI: 7.5696
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Mapoly0046s0060.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260767e-24771741100
               DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleql 90 
                          +C aC++ r kC+++Cv+apyfpa+++ kfa+vh++F as+v+k+l++lpe+ r dam+ l++ Aear+++  +G + +  +l+++ ++l
  Mapoly0046s0060.1.p  77 PCGACRLFRWKCTAECVFAPYFPAAEALKFAYVHEIFKASKVIKILHDLPESIRADAMTLLAFDAEARMKE--HGWMFHGCALHRRTMEL 164
                          7********************************************************************98..55555555555555555 PP

               DUF260  91 kaelallkee 100
                          ++e+ +l+e+
  Mapoly0046s0060.1.p 165 QEEVPELREQ 174
                          5555555544 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089115.67176175IPR004883Lateral organ boundaries, LOB
PfamPF031952.5E-2377170IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 204 aa     Download sequence    Send to blast
MSVQRKTLTN APLMTLTRLG NKIGTVLVPK FGAIDHILRS HIVYDGHNIH QIVDPHARYC  60
PGHTMSHTGG GSSPSSPCGA CRLFRWKCTA ECVFAPYFPA AEALKFAYVH EIFKASKVIK  120
ILHDLPESIR ADAMTLLAFD AEARMKEHGW MFHGCALHRR TMELQEEVPE LREQINYFED  180
REQRRISQGS SECSCQDVYI AEI*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A1e-22751689104LOB family transfactor Ramosa2.1
5ly0_B1e-22751689104LOB family transfactor Ramosa2.1
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A2R6WZF41e-152A0A2R6WZF4_MARPO; Uncharacterized protein
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G27650.12e-24LOB domain-containing protein 25