PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Mapoly0049s0083.2.p

Organism

Marchantia polymorpha

Taxonomic ID

3197

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Marchantiophyta; Marchantiopsida; Marchantiidae; Marchantiales; Marchantiaceae; Marchantia

Family

SRS

Protein Properties

Length: 259aa MW: 26851 Da PI: 9.4161

Description

SRS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Mapoly0049s0083.2.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF702	207.1	4.5e-64	57	215	2	154
DUF702 2 rsgtasCqdCGnqakkdCaheRCRtCCksrgfdCathvkstWvpaakrrerqqqlaaasskaaasaaeaaskrkrelkskkqsalsstkl 91 ++g+++C +CGnqakkdC h+RCRtCCksrg++C th+kstWvpaakrrerq+++aaa++ + + +++ r+ l+ ++ ++s+t++ Mapoly0049s0083.2.p 57 TQGGTACLECGNQAKKDCLHQRCRTCCKSRGLSCPTHIKSTWVPAAKRRERQAAEAAAAAAG-QPRPKSKRARSLALSVPANPTTSHTNT 145 57889********************************************99888874433.33344444444445788999999 PP DUF702 92 ssaeskkeletss.......lPeevsseavfrcvrvssvddgeeelaYqtavsigGhvfkGiLydqGlee 154 s ++s++ ++++s lP+e++++a+f+cvrv++v+dg++e+aYq++v+igGh+fkG+LydqG+++ Mapoly0049s0083.2.p 146 SAGTSPRGSDINSgqpgrgpLPSELRTQALFKCVRVTGVEDGDHEFAYQATVKIGGHIFKGVLYDQGMDN 215 ********9****************************************************986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF05142	2.1E-57	60	214	IPR007818	Protein of unknown function DUF702
TIGRFAMs	TIGR01623	8.9E-26	63	104	IPR006510	Zinc finger, lateral root primordium type 1
TIGRFAMs	TIGR01624	4.2E-26	166	213	IPR006511	Lateral Root Primordium type 1, C-terminal

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009733	Biological Process	response to auxin
GO:0048364	Biological Process	root development
GO:0042803	Molecular Function	protein homodimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 259 aa Download sequence Send to blast
MRGMDVQPLG GADVRPGDAR PENKEDEQQH ALQLHDAQRA KAPPQPPGGA GGVSAGTQGG 60 TACLECGNQA KKDCLHQRCR TCCKSRGLSC PTHIKSTWVP AAKRRERQAA EAAAAAAGQP 120 RPKSKRARSL ALSVPANPTT SHTNTSAGTS PRGSDINSGQ PGRGPLPSEL RTQALFKCVR 180 VTGVEDGDHE FAYQATVKIG GHIFKGVLYD QGMDNGSTSA TNVADLQLGG RSMPTSSALI 240 DPTGLYGNPN SALLGALR*

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator that binds DNA on 5'-ACTCTAC-3' and promotes auxin homeostasis-regulating gene expression (e.g. YUC genes), as well as genes affecting stamen development, cell expansion and timing of flowering. Synergistically with other SHI-related proteins, regulates gynoecium, stamen and leaf development in a dose-dependent manner, controlling apical-basal patterning. Promotes style and stigma formation, and influence vascular development during gynoecium development. May also have a role in the formation and/or maintenance of the shoot apical meristem (SAM). Modulates root growth. {ECO:0000269\|PubMed:16740146, ECO:0000269\|PubMed:18835563}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Expression repressed by LDL1 via histone H3 and H4 deacetylation. {ECO:0000269\|PubMed:18835563}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024359764.1	3e-82	protein LATERAL ROOT PRIMORDIUM 1-like
Swissprot	Q94CK9	3e-47	LRP1_ARATH; Protein LATERAL ROOT PRIMORDIUM 1
TrEMBL	A0A2R6WY87	0.0	A0A2R6WY87_MARPO; Uncharacterized protein
STRING	PP1S373_11V6.1	1e-81	(Physcomitrella patens)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G12330.2	3e-41	Lateral root primordium (LRP) protein-related

Link Out ? help Back to Top
Phytozome	Mapoly0049s0083.2.p

Publications ? help Back to Top
Estornell LH,Landberg K,Cierlik I,Sundberg E SHI/STY Genes Affect Pre- and Post-meiotic Anther Processes in Auxin Sensing Domains in Arabidopsis. Front Plant Sci, 2018. 9: p. 150 [PMID:29491878]