PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Mapoly0050s0010.2.p
Organism
Marchantia polymorpha
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Marchantiophyta; Marchantiopsida; Marchantiidae; Marchantiales; Marchantiaceae; Marchantia
Family E2F/DP
Protein Properties Length: 346aa    MW: 38111.9 Da    PI: 5.8254
Description E2F/DP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Mapoly0050s0010.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1E2F_TDP89.13.1e-2879160371
              E2F_TDP   3 eksLrlltqkflklleksee.givtlnevakeLvse................dvknkrRRiYDilNVLealnliekkekneirwkg 71 
                          +k+Lr++++k   ++ek+e+ g++t+neva+eLv+e                d+kn+rRR+YD+lNVL+a+++i+k ek+ei+wkg
  Mapoly0050s0010.2.p  79 GKGLRHFSMK---VCEKVESkGRTTYNEVADELVAEyknpdnvlfspdqqqfDEKNIRRRVYDALNVLMAMDIISK-EKKEIQWKG 160
                          79********...*****999*******************************************************.*******98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0094041.2E-1112343IPR015648Transcription factor DP
Gene3DG3DSA:1.10.10.102.2E-4674166IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM013728.7E-3477160IPR003316E2F/DP family, winged-helix DNA-binding domain
PfamPF023191.0E-2580160IPR003316E2F/DP family, winged-helix DNA-binding domain
SuperFamilySSF467852.04E-2280161IPR011991Winged helix-turn-helix DNA-binding domain
CDDcd144582.21E-39165269IPR014889Transcription factor DP, C-terminal
SMARTSM011381.5E-53167341IPR014889Transcription factor DP, C-terminal
PfamPF087812.1E-36168279IPR014889Transcription factor DP, C-terminal
SuperFamilySSF1440743.14E-37168279No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0042023Biological ProcessDNA endoreduplication
GO:0005634Cellular Componentnucleus
GO:0005667Cellular Componenttranscription factor complex
GO:0005737Cellular Componentcytoplasm
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 346 aa     Download sequence    Send to blast
MHGGMQFTST TVGPSVSMDS GSMGSPSQGT EATMGTPGPN GIPLRLQHPE SMGDDPESPD  60
VIGRKKKRGQ RTAAGEKGGK GLRHFSMKVC EKVESKGRTT YNEVADELVA EYKNPDNVLF  120
SPDQQQFDEK NIRRRVYDAL NVLMAMDIIS KEKKEIQWKG LPSTSANNAE ALKAERIKLS  180
GLLEKKGAYL QELEEQIVGL QNLVDRNERM YHIKGHVPAG GVALPFILVQ TRPQATVEVE  240
ISEDMQLVHF DFNSTPFELH DDAFVLKAMS FGDGQNSDNR DLPFTDSEEG FEPAYDDHSS  300
PVSNLYHRPS IMSMSPRPPP PYSVSTSPPP VPSILKARVK HENYG*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1cf7_B3e-3971166194PROTEIN (TRANSCRIPTION FACTOR DP-2)
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtInvolved in the regulation of the G1/S transition. Increases the DNA binding activity of E2F proteins after heterodimerization. The complex DPB/E2FC restricts cell division and lateral root initiation and may function as a negative regulator of E2F-regulated genes. The interaction with SKP2A is controlled by auxin. {ECO:0000269|PubMed:11891240, ECO:0000269|PubMed:16920782}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002964245.21e-144transcription factor-like protein DPB isoform X5
SwissprotQ9FNY21e-116DPB_ARATH; Transcription factor-like protein DPB
TrEMBLA0A2R6WXG10.0A0A2R6WXG1_MARPO; Uncharacterized protein
STRINGXP_010241817.11e-134(Nelumbo nucifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G03415.11e-118Transcription factor DP