PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Mapoly0050s0010.4.p
Organism
Marchantia polymorpha
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Marchantiophyta; Marchantiopsida; Marchantiidae; Marchantiales; Marchantiaceae; Marchantia
Family E2F/DP
Protein Properties Length: 432aa    MW: 47055.6 Da    PI: 6.4585
Description E2F/DP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Mapoly0050s0010.4.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1E2F_TDP89.42.5e-28172246371
              E2F_TDP   3 eksLrlltqkflklleksee.givtlnevakeLvse.........dvknkrRRiYDilNVLealnliekkekneirwkg 71 
                          +k+Lr++++k   ++ek+e+ g++t+neva+eLv+e         d+kn+rRR+YD+lNVL+a+++i+k ek+ei+wkg
  Mapoly0050s0010.4.p 172 GKGLRHFSMK---VCEKVESkGRTTYNEVADELVAEyknpdnqqfDEKNIRRRVYDALNVLMAMDIISK-EKKEIQWKG 246
                          79********...*****999************************************************.*******98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.101.6E-44167252IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM013727.3E-35170246IPR003316E2F/DP family, winged-helix DNA-binding domain
PfamPF023191.0E-25173246IPR003316E2F/DP family, winged-helix DNA-binding domain
SuperFamilySSF467852.31E-21173247IPR011991Winged helix-turn-helix DNA-binding domain
CDDcd144588.53E-40251355IPR014889Transcription factor DP, C-terminal
SMARTSM011381.5E-53253427IPR014889Transcription factor DP, C-terminal
SuperFamilySSF1440744.97E-37254365No hitNo description
PfamPF087813.3E-36254365IPR014889Transcription factor DP, C-terminal
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0042023Biological ProcessDNA endoreduplication
GO:0005634Cellular Componentnucleus
GO:0005667Cellular Componenttranscription factor complex
GO:0005737Cellular Componentcytoplasm
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 432 aa     Download sequence    Send to blast
MYGQRGFDGG SSRKGNNPGF KTGPRTKPPG RSTAPILGSS SSLQSDLLRE FHETGIYGHA  60
EDIGIIRNGE LSLLSNGSTG GHDYSRGPGE GKDMHGGMQF TSTTVGPSVS MDSGSMGSPS  120
QGTEATMGTP GPNGIPLRLQ HPESMGDDPE SPDVIGRKKK RGQRTAAGEK GGKGLRHFSM  180
KVCEKVESKG RTTYNEVADE LVAEYKNPDN QQFDEKNIRR RVYDALNVLM AMDIISKEKK  240
EIQWKGLPST SANNAEALKA ERIKLSGLLE KKGAYLQELE EQIVGLQNLV DRNERMYHIK  300
GHVPAGGVAL PFILVQTRPQ ATVEVEISED MQLVHFDFNS TPFELHDDAF VLKAMSFGDG  360
QNSDNRDLPF TDSEEGFEPA YDDHSSPVSN LYHRPSIMSM SPRPPPPYSV STSPPPVPSI  420
LKARVKHENY G*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1cf7_B3e-38164252194PROTEIN (TRANSCRIPTION FACTOR DP-2)
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtInvolved in the regulation of the G1/S transition. Increases the DNA binding activity of E2F proteins after heterodimerization. The complex DPB/E2FC restricts cell division and lateral root initiation and may function as a negative regulator of E2F-regulated genes. The interaction with SKP2A is controlled by auxin. {ECO:0000269|PubMed:11891240, ECO:0000269|PubMed:16920782}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002964245.21e-140transcription factor-like protein DPB isoform X5
SwissprotQ9FNY21e-110DPB_ARATH; Transcription factor-like protein DPB
TrEMBLA0A2R6WXI10.0A0A2R6WXI1_MARPO; Uncharacterized protein
STRINGXP_010241817.11e-126(Nelumbo nucifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G03415.11e-112Transcription factor DP