PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Mapoly0051s0062.1.p

Organism

Marchantia polymorpha

Taxonomic ID

3197

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Marchantiophyta; Marchantiopsida; Marchantiidae; Marchantiales; Marchantiaceae; Marchantia

Family

LBD

Protein Properties

Length: 207aa MW: 22596.6 Da PI: 8.8751

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Mapoly0051s0062.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	134.9	3e-42	43	143	1	101
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleql 90 +CaaCk+lrr+Ca++C+++pyf ++p+kfa+vhk+FGasnv+k+l ++pe++r da+sslvyeA+ar+rdPvyG++g i++lqqq ++l Mapoly0051s0062.1.p 43 PCAACKLLRRRCAQECPFSPYFSPHEPQKFACVHKIFGASNVSKMLMEVPESQRADAASSLVYEANARIRDPVYGCMGAISALQQQAQSL 132 7*************************************************************************************** PP DUF260 91 kaelallkeel 101 +ael+++++e+ Mapoly0051s0062.1.p 133 QAELNAVRQEI 143 *****9985 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	25.558	42	143	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	9.0E-42	43	140	IPR004883	Lateral organ boundaries, LOB

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus

Sequence ? help Back to Top
Protein Sequence Length: 207 aa Download sequence Send to blast
MSKERETFGL LDSNSRKIRR AEPEKVVRRA MLGPQGQGNS STPCAACKLL RRRCAQECPF 60 SPYFSPHEPQ KFACVHKIFG ASNVSKMLME VPESQRADAA SSLVYEANAR IRDPVYGCMG 120 AISALQQQAQ SLQAELNAVR QEIMRYRCHE NAVAAVMVAG FPPNNDRSTG SGALSSQTSA 180 STDYTVPSPS SVATPDVKER YWTSMN*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	5e-48	39	150	7	118	LOB family transfactor Ramosa2.1
5ly0_B	5e-48	39	150	7	118	LOB family transfactor Ramosa2.1
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002279029.1	6e-78	PREDICTED: LOB domain-containing protein 15
Refseq	XP_007011230.1	6e-78	PREDICTED: LOB domain-containing protein 15
Swissprot	Q8L5T5	2e-67	LBD15_ARATH; LOB domain-containing protein 15
TrEMBL	A0A2R6WX81	1e-152	A0A2R6WX81_MARPO; Uncharacterized protein
STRING	VIT_13s0067g02380.t01	2e-77	(Vitis vinifera)
STRING	EOY20040	2e-77	(Theobroma cacao)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Representative plant	OGRP60	16	318

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G40470.1	4e-68	LOB domain-containing protein 15

Link Out ? help Back to Top
Phytozome	Mapoly0051s0062.1.p

Publications ? help Back to Top
Ohashi-Ito K,Iwamoto K,Fukuda H LOB DOMAIN-CONTAINING PROTEIN 15 Positively Regulates Expression of VND7, a Master Regulator of Tracheary Elements. Plant Cell Physiol., 2018. 59(5): p. 989-996 [PMID:29444288]