PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Mapoly0053s0055.1.p
Organism
Marchantia polymorpha
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Marchantiophyta; Marchantiopsida; Marchantiidae; Marchantiales; Marchantiaceae; Marchantia
Family NF-YB
Protein Properties Length: 159aa    MW: 17192.3 Da    PI: 4.5158
Description NF-YB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Mapoly0053s0055.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YB74.61.5e-23996491
                NF-YB  4 qdrflPianvsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvylkkyr 91
                         +d  lP a +++i+k++lP + +++kda++++ ec +efi +++se+++ c +e+++ti+++ +l al  lGf +y+ ++++  +++r
  Mapoly0053s0055.1.p  9 EDVSLPKATMTKIIKEMLPPDVRVAKDAQDLLVECCVEFINLISSESNEICSKEEKRTIAPEHVLRALEILGFGEYIGEVQAAYEQHR 96
                         7889*************************************************************************99998776666 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.20.108.8E-385141IPR009072Histone-fold
SuperFamilySSF471137.42E-339141IPR009072Histone-fold
PfamPF008089.2E-221276IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 159 aa     Download sequence    Send to blast
MESASRGKED VSLPKATMTK IIKEMLPPDV RVAKDAQDLL VECCVEFINL ISSESNEICS  60
KEEKRTIAPE HVLRALEILG FGEYIGEVQA AYEQHRFETL DSPKAGGRWG SKEAVPGGMT  120
EEEAIAAQQR MFAEARARMN SSGGVSASSV QQSGSDLD*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1jfi_B5e-3911364133Transcription Regulator NC2 beta chain
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002965285.23e-86protein Dr1 homolog
RefseqXP_024516159.13e-86protein Dr1 homolog
SwissprotP495921e-72NC2B_ARATH; Protein Dr1 homolog
TrEMBLA0A2R6WWA21e-112A0A2R6WWA2_MARPO; Uncharacterized protein
STRINGEFJ124701e-85(Selaginella moellendorffii)
STRINGEFJ341231e-85(Selaginella moellendorffii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP34491727
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G23090.22e-72nuclear factor Y, subunit B13
Publications ? help Back to Top
  1. Zhao H, et al.
    The Arabidopsis thaliana Nuclear Factor Y Transcription Factors.
    Front Plant Sci, 2016. 7: p. 2045
    [PMID:28119722]