PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Mapoly0054s0011.1.p
Organism
Marchantia polymorpha
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Marchantiophyta; Marchantiopsida; Marchantiidae; Marchantiales; Marchantiaceae; Marchantia
Family C3H
Protein Properties Length: 147aa    MW: 15779.5 Da    PI: 8.2137
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Mapoly0054s0011.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH35.22.1e-115373525
                         --SGGGGTS--TTTTT-SS-S CS
              zf-CCCH  5 lCrffartGtCkyGdrCkFaH 25
                          C +f+rtGtC+yG++C++aH
  Mapoly0054s0011.1.p 53 VCAYFQRTGTCNYGSNCQYAH 73
                         6******************** PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004512.8E-5338IPR003604Zinc finger, U1-type
PfamPF062206.0E-12439IPR013085Zinc finger, U1-C type
SuperFamilySSF576676.33E-16447No hitNo description
PROSITE profilePS5010314.4834876IPR000571Zinc finger, CCCH-type
SMARTSM003561.1E-65075IPR000571Zinc finger, CCCH-type
SuperFamilySSF902298.24E-75275IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.107.1E-85373IPR000571Zinc finger, CCCH-type
PfamPF006423.9E-95373IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 147 aa     Download sequence    Send to blast
MPTPKYVCDY CDKTFHDTPA SRKRHMQGIT HQRAVKAWYD SFRDKDQGGN RGVCAYFQRT  60
GTCNYGSNCQ YAHITHSGPS YAAAGMSVSN ISQSDLGPSP TNAAHGAPSA TSASVPVSRV  120
AENKLPPSLQ PPPEDGYPSL PFVDWG*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002455379.15e-41zinc finger CCCH domain-containing protein 3 isoform X2
TrEMBLA0A2R6WVN11e-105A0A2R6WVN1_MARPO; Uncharacterized protein
STRINGPavir.Eb00973.1.p4e-41(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP85391213
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G26749.14e-27C3H family protein