PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Mapoly0056s0059.1.p
Organism
Marchantia polymorpha
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Marchantiophyta; Marchantiopsida; Marchantiidae; Marchantiales; Marchantiaceae; Marchantia
Family Trihelix
Protein Properties Length: 502aa    MW: 54436.7 Da    PI: 8.38
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Mapoly0056s0059.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix55.21.9e-1761141182
             trihelix   1 rWtkqevlaLiearremeerlrrg.klkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyf 82 
                          rW+ +e+ +L++a+r+ +e+ +++   + ++W +++  ++e+g+ r + qC+++w+nl ++y++i+++ +k  s+++  + + 
  Mapoly0056s0059.1.p  61 RWMMHETVVLVAAKRKHDEEAGDEyVPAHKKWGAIAVDVKEKGVDRDARQCRKRWSNLYQDYRRIRDWLRK--SGVEPYWTMR 141
                          8**************99999886527999*****************************************9..5666666655 PP
2trihelix51.13.6e-16236319180
             trihelix   1 rWtkqevlaLiearremeerlrrgk......lkkplWeevskkmrergferspkqCkekwenl.nkrykkikegekkrtsessstcp 80 
                          +Wtk+e+ +L+ ++++ + + +++       +   +W+++s+++++ g+ r ++qC+++w+nl n++ykki++++kk+   ++s ++
  Mapoly0056s0059.1.p 236 KWTKHETVVLLVGKTKYDCKAKETTasskavRSDEKWDSISAYCKANGVDRDAQQCRKRWSNLhNGDYKKIRDWQKKN---VESYWS 319
                          7**************77777776433344558899***************************9668**********95...444554 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500907.56154119IPR017877Myb-like domain
Gene3DG3DSA:1.10.10.604.1E-455120IPR009057Homeodomain-like
SMARTSM007171.358121IPR001005SANT/Myb domain
PfamPF138372.6E-1260135No hitNo description
Gene3DG3DSA:1.10.10.603.8E-5228305IPR009057Homeodomain-like
PROSITE profilePS500907.329229299IPR017877Myb-like domain
SuperFamilySSF466893.67E-5232306IPR009057Homeodomain-like
SMARTSM007171.2233301IPR001005SANT/Myb domain
PfamPF138371.1E-9235320No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0050777Biological Processnegative regulation of immune response
GO:0071219Biological Processcellular response to molecule of bacterial origin
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0042803Molecular Functionprotein homodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 502 aa     Download sequence    Send to blast
MVGVGVGVGG AAAAAAAATG VVVVVGSGVN GVGGGGGGGG AALSGGGSDG GAGEEKVRNP  60
RWMMHETVVL VAAKRKHDEE AGDEYVPAHK KWGAIAVDVK EKGVDRDARQ CRKRWSNLYQ  120
DYRRIRDWLR KSGVEPYWTM RHDKRRDNKL PGSFDPEVYA DMDAFLSKKR GITPRAASDS  180
AQPIHDEGLG SEIEQDHEGH DAADVGSGDG SSAPGGSDKE QPTDSAGDDR KKRNSKWTKH  240
ETVVLLVGKT KYDCKAKETT ASSKAVRSDE KWDSISAYCK ANGVDRDAQQ CRKRWSNLHN  300
GDYKKIRDWQ KKNVESYWSM KSEKRRQNKL PGFFDQQVFA VMDAFCTKKA NGELDGARFA  360
NLTAVEDLLL SEVEQDHEEP SAPDGGRICS APAPESGTLS CRVEQAGVAS VGASVGRKKR  420
KRMPNGVEVD EHKDHKDHLT AILESSGKAM QVALTENIQA QIEAQKRNCE LDRNQRKQQG  480
DNLVGVLSKL AEAMAKIAEK L*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1416421RKKRKR
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00288DAPTransfer from AT2G33550Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A176WAQ10.0A0A176WAQ1_MARPO; Uncharacterized protein
TrEMBLA0A2R6WUR00.0A0A2R6WUR0_MARPO; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP17471336
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G33550.16e-45Trihelix family protein