PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Mapoly0056s0127.1.p
Organism
Marchantia polymorpha
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Marchantiophyta; Marchantiopsida; Marchantiidae; Marchantiales; Marchantiaceae; Marchantia
Family MYB
Protein Properties Length: 452aa    MW: 51431 Da    PI: 6.3724
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Mapoly0056s0127.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding42.71.3e-13231274448
                          S-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
      Myb_DNA-binding   4 WTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                          W++ Ed++l ++v+++G+++W+ Ia++++ g t+k+ck+rw  yl
  Mapoly0056s0127.1.p 231 WSKKEDKQLGRLVALYGTNSWSIIASCFP-GWTDKHCKDRWCEYL 274
                          *****************************.***********9986 PP
2Myb_DNA-binding54.52.7e-17280323146
                          TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
      Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                          +g+WT+eEd++l  a++ +G++ W++I++ ++ gRt++ +k+r+++
  Mapoly0056s0127.1.p 280 KGPWTEEEDKILRVAHNHYGNK-WTSISKLIP-GRTDNAVKNRFYS 323
                          79********************.*********.***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129415.49223274IPR017930Myb domain
SuperFamilySSF466894.97E-28225321IPR009057Homeodomain-like
SMARTSM007179.3E-12227276IPR001005SANT/Myb domain
CDDcd001671.15E-10231274No hitNo description
Gene3DG3DSA:1.10.10.608.1E-21231279IPR009057Homeodomain-like
PfamPF002496.0E-12231274IPR001005SANT/Myb domain
PROSITE profilePS5129425.003275329IPR017930Myb domain
SMARTSM007171.7E-16279327IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.1E-23280328IPR009057Homeodomain-like
PfamPF002493.4E-16280323IPR001005SANT/Myb domain
CDDcd001672.67E-11282322No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 452 aa     Download sequence    Send to blast
MSSFTNFRSN SINIMDDWDL GDEISLSHLY FSAFREVEEN PHSFSEYIAK ICSPTRRKEK  60
TEDSTACKPW ISKKQKVEEN ELSSTAENYK ATSNADMVHK ELSNADMCNA TTEGDLSHIQ  120
ISSDSQKAQI QDLNPSREHS GESSLTSKRQ KLRTADVDDG QPKTPKTPKT PENLKDEKMV  180
VLDEMKKRKG KWKKIPAEFS PNLLDGRSLQ DENTDAYHIQ MAGPSVKTPL WSKKEDKQLG  240
RLVALYGTNS WSIIASCFPG WTDKHCKDRW CEYLDPSIKK GPWTEEEDKI LRVAHNHYGN  300
KWTSISKLIP GRTDNAVKNR FYSAMKRRRR NASVRERARD REKAAWEEEM MKVLNSREMN  360
SDENDSGRGV DPKDTVNEQP RQELLNNLPV DLVENSGQNY SGNEVQVNLD QNLELELNSV  420
HNLSPTDQES VTKQVAGSYS KSSDTESSTR N*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gv2_A1e-282263283104MYB PROTO-ONCOGENE PROTEIN
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A2R6WV030.0A0A2R6WV03_MARPO; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP5171784
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G02320.21e-27myb domain protein 3r-5