PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Mapoly0057s0012.1.p
Organism
Marchantia polymorpha
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Marchantiophyta; Marchantiopsida; Marchantiidae; Marchantiales; Marchantiaceae; Marchantia
Family WRKY
Protein Properties Length: 898aa    MW: 96842 Da    PI: 7.2152
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Mapoly0057s0012.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY102.22.9e-32624682159
                          ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
                 WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                          +dD y+WrKYGqK vk+s++prsYYrCt  +Cpv+k+vers+edp +v++tYeg+Hnh 
  Mapoly0057s0012.1.p 624 MDDSYRWRKYGQKAVKNSPYPRSYYRCTNLKCPVRKRVERSSEDPGLVITTYEGTHNHV 682
                          59********************************************************5 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.2E-34609684IPR003657WRKY domain
SuperFamilySSF1182901.7E-28616683IPR003657WRKY domain
PROSITE profilePS5081132.064619684IPR003657WRKY domain
SMARTSM007745.5E-38624683IPR003657WRKY domain
PfamPF031062.5E-25625681IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009414Biological Processresponse to water deprivation
GO:0009651Biological Processresponse to salt stress
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 898 aa     Download sequence    Send to blast
MIPDERLSRS SFAASCTSAW PSFSKHDQRP VKLIDDFARA RNSSAAAAAA EPIPRPGALK  60
GMPASLSRQI ASPFHHLQDH HHHSAASTTT ASSSSSSSSL ARNVTTNFVP KIAVVAAPAA  120
AAQSPSPPTH TPASSLPSSP SLSLPRTPSQ SPLSPSSLHP SFTTQSLLAH LELDLTDEPH  180
SAHSSFSADR SAQFFRKEPQ LIDFSSQIAP SDECDFHPQA QIVQQQQQQQ QAGVLSDKSL  240
YQEISLFKDI LGTIDCEPGS REAAAGNWLG LNTASERQQG LLNTKARLIR LLQQRKGGQV  300
QGALCKLEMA EQQQPGGAGG TAGSQGDTSA HDEMEKVLQE CREDQESRPP FSGSPSPFND  360
LYNLQDSSLF PLFTSSSSSA SSAQYQSRSS DALFSDAFGG WIGDSTPVGE QQQQQQQQQG  420
QQPASYDPQM PSSMSSKEQQ IYGTFASNSA SFQQFSRYAE SDKLAQVQEL EQTLGLSHDD  480
RPPTPPDAST ARFASAASAS STGAAVPRSS SDLAAAGASG ASSMVASTPN SSMSSSSSDG  540
AEDDTTTQPT GPGATTVSSK RKTPERDESE EKSPAHATGA TTSSGGDSRK AQQPAKVPRK  600
KGPKSSRVRE PRFAIQTRSD VEIMDDSYRW RKYGQKAVKN SPYPRSYYRC TNLKCPVRKR  660
VERSSEDPGL VITTYEGTHN HVSPATRPSP SDASYHPDRG VPGAQFPGSA APYSFGQHHQ  720
PPPVYPAPRS NFDLAMQIRG AGGDMQQHRF PQARQAGPDS LRGHGNALTS LSRSNQVPEL  780
GMQMGGADLL ARIQNQQAQM RLQDQVNRLV NVSGLESHNR GAPDHIHTLQ NLQQQLNQQQ  840
QQHLQSQQFQ NQLQQQQQQQ QQQQQQQQQQ NPRGSSDQAT DEGLLEDILR PGIIRKP*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A9e-25614685778Probable WRKY transcription factor 4
2lex_A9e-25614685778Probable WRKY transcription factor 4
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00067PBMTransfer from AT1G69310Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A2R6WU400.0A0A2R6WU40_MARPO; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP1417875
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69310.22e-35WRKY DNA-binding protein 57