PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Mapoly0060s0092.1.p
Organism
Marchantia polymorpha
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Marchantiophyta; Marchantiopsida; Marchantiidae; Marchantiales; Marchantiaceae; Marchantia
Family LBD
Protein Properties Length: 140aa    MW: 16086.8 Da    PI: 9.5722
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Mapoly0060s0092.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260100.81.3e-3113112196
               DUF260   1 aCaaCkvl...rr.kCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqq 86 
                          aC aCk l   r+ +C+ dC++apyfpae++ kf n+ k+FG +nv k+l++lpe+ reda++sl++eAear++dPvyG+ g + + q+ 
  Mapoly0060s0092.1.p  13 ACGACKCLygkRKwECKVDCIFAPYFPAEDTLKFSNLLKVFGYRNVRKMLQNLPESSREDAVTSLCFEAEARIKDPVYGCSGELYRTQKS 102
                          6*****964435579*************************************************************************** PP

               DUF260  87 leqlkaelal 96 
                          +++l + l++
  Mapoly0060s0092.1.p 103 MSELMQRLEM 112
                          9999988765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031952.5E-3113112IPR004883Lateral organ boundaries, LOB
PROSITE profilePS5089117.34215117IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 140 aa     Download sequence    Send to blast
MEPRKQTRSG GCACGACKCL YGKRKWECKV DCIFAPYFPA EDTLKFSNLL KVFGYRNVRK  60
MLQNLPESSR EDAVTSLCFE AEARIKDPVY GCSGELYRTQ KSMSELMQRL EMIGILQDIF  120
GRRRIASERM RVRVLRHTS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A2e-3071115105LOB family transfactor Ramosa2.1
5ly0_B2e-3071115105LOB family transfactor Ramosa2.1
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
SwissprotQ8LBW39e-29LBD12_ARATH; LOB domain-containing protein 12
TrEMBLA0A2R6WT468e-99A0A2R6WT46_MARPO; Uncharacterized protein
STRINGXP_004505337.18e-29(Cicer arietinum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G30130.14e-31LBD family protein
Publications ? help Back to Top
  1. Penfield S, et al.
    Reserve mobilization in the Arabidopsis endosperm fuels hypocotyl elongation in the dark, is independent of abscisic acid, and requires PHOSPHOENOLPYRUVATE CARBOXYKINASE1.
    Plant Cell, 2004. 16(10): p. 2705-18
    [PMID:15367715]