PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Mapoly0066s0113.1.p
Organism
Marchantia polymorpha
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Marchantiophyta; Marchantiopsida; Marchantiidae; Marchantiales; Marchantiaceae; Marchantia
Family C3H
Protein Properties Length: 363aa    MW: 40830.2 Da    PI: 6.5726
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Mapoly0066s0113.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH382.8e-12218243126
                          --S---SGGGGTS--TTTTT-SS-SS CS
              zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                          y   +C+++ +tG+C yGd+CkF+H+
  Mapoly0066s0113.1.p 218 YQPDICKDYKETGYCGYGDSCKFMHD 243
                          66789********************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF902293.14E-9216248IPR000571Zinc finger, CCCH-type
SMARTSM003561.1E-7217244IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.878217245IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.9E-12218248IPR000571Zinc finger, CCCH-type
PfamPF006425.1E-10218243IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:3.30.40.101.4E-13276352IPR013083Zinc finger, RING/FYVE/PHD-type
SuperFamilySSF578501.63E-12292335No hitNo description
PfamPF139202.0E-8292335No hitNo description
SMARTSM001840.001293330IPR001841Zinc finger, RING-type
PROSITE profilePS5008910.483293331IPR001841Zinc finger, RING-type
CDDcd001622.06E-8293334No hitNo description
PROSITE patternPS005180308317IPR017907Zinc finger, RING-type, conserved site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 363 aa     Download sequence    Send to blast
MTHESEPASC VATSAAGNDE NAENAARRTD GRIGSTEESC TFFKKSVRNK NMRKRTSENN  60
EEDEDVGLVQ KLKAVKKSDG RLEFSSGTGP AKKLVAVDEG TKEDEKLGPD GEKKGVFFFE  120
SSREIQTQND SRATATLETE TAFDRDARAI RERVLKQADE ALKGNNSASS KVYKGINAYT  180
DHKAGFRREH TISGEKAGGA HGPLRASAHI RWSVRFDYQP DICKDYKETG YCGYGDSCKF  240
MHDRGDYKSG WQMEKEWDES QKKKKDRIVQ GLPEEEEAGE EDSDEDDELP FACFICREPF  300
KEPVMTHCKH YFCEHCALKH HARNKHCFVC NKPTNGVFNT AHAIVKRMKE ANAAEEEDKK  360
RT*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5z56_M9e-65130356113325RING finger protein 113A
5z58_M9e-65130356113325RING finger protein 113A
6ff4_t9e-65130356113325RING finger protein 113A
6ff7_t9e-65130356113325RING finger protein 113A
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024382662.11e-149zinc finger CCCH domain-containing protein 15-like
SwissprotQ8GX841e-140C3H1_ARATH; Zinc finger CCCH domain-containing protein 1
TrEMBLA0A2R6WQP10.0A0A2R6WQP1_MARPO; Uncharacterized protein
STRINGPP1S114_84V6.11e-148(Physcomitrella patens)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP58961720
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G01350.11e-140C3H family protein