PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Mapoly0072s0102.1.p
Organism
Marchantia polymorpha
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Marchantiophyta; Marchantiopsida; Marchantiidae; Marchantiales; Marchantiaceae; Marchantia
Family RAV
Protein Properties Length: 1165aa    MW: 126793 Da    PI: 8.0885
Description RAV family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Mapoly0072s0102.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP238.53e-12366414155
                  AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                          s+y+GV   + +grW A+I++      ++r++lg+f  +e+Aa+a+++a+ k++g
  Mapoly0072s0102.1.p 366 SQYRGVVPQP-NGRWGAQIYEK-----HQRVWLGTFNREEDAARAYDRAAMKFRG 414
                          78****9888.8*********3.....5************************998 PP
2B397.96.1e-31501601199
                          EEEE-..-HHHHTT-EE--HHH.HTT.....---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE- CS
                   B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.....ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkld 85 
                          f+k+ tpsdv+k++rlv+pk++ae++      ++ +++ tl++ed sg+ W+++++y+++s++yv+tkGW++Fvk+++L++gD+v F+  
  Mapoly0072s0102.1.p 501 FEKAVTPSDVGKLNRLVIPKQHAERCfpldlALNAPCQ-TLSFEDVSGKHWRFRYSYWNSSQSYVFTKGWSRFVKEKKLEAGDTVSFE-- 587
                          89****************************98888885.*************************************************.. PP

                          SSSEE..EEEEE-S CS
                   B3  86 grsefelvvkvfrk 99 
                          +  ++el++ ++r+
  Mapoly0072s0102.1.p 588 RGPNQELYIDFRRR 601
                          44889999999986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000183.08E-14366424No hitNo description
SuperFamilySSF541713.07E-17366422IPR016177DNA-binding domain
PfamPF008472.6E-7367414IPR001471AP2/ERF domain
SMARTSM003805.4E-29367428IPR001471AP2/ERF domain
PROSITE profilePS5103220.455367422IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.6E-21367422IPR001471AP2/ERF domain
Gene3DG3DSA:2.40.330.104.9E-39496600IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019368.5E-30498597IPR015300DNA-binding pseudobarrel domain
CDDcd100172.60E-27499600No hitNo description
PfamPF023621.6E-27501601IPR003340B3 DNA binding domain
PROSITE profilePS5086315.016501602IPR003340B3 DNA binding domain
SMARTSM010199.2E-26501602IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009741Biological Processresponse to brassinosteroid
GO:0009910Biological Processnegative regulation of flower development
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0048366Biological Processleaf development
GO:0048527Biological Processlateral root development
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 1165 aa     Download sequence    Send to blast
MMTAATSRVT CLRLHSDPKE IADLWSNAVL RSQRSPLSTP GKGGPDVTLR LRAVWDQQSS  60
TSNTTDASLQ QQMTSPRLNR HGLTLNHEAA PGARTTQSST RSCDNSSSSS PPEQQQQQQQ  120
QHQQQQHHHH EHMKSLNASI NINTAVNSSS SDDKELVTVE RKTAKLEIGE HHHHLHHLHN  180
LHHHHFHQQQ MVKSSQPIKV EWAERGAAAA AAAGAGSGIN LANFSQSHKL EVSGDVKDEG  240
AASEECSSSP CSSSDKRMNL ELGACSQDDA AAAALVGVAA AAAASAAAGE RGGERGPPSW  300
AGTAWGPGCV TNPRSSSCLN ERAASERSFS GVSGDAVTGP PEESSDGGED SRGGVLKEGV  360
NKLPSSQYRG VVPQPNGRWG AQIYEKHQRV WLGTFNREED AARAYDRAAM KFRGRDAMTN  420
FRPVQETDPE AVFLRQYSKE QIVEMLRRHT YEEELEQSKR LASMRVTSPQ TPAGMVPNPP  480
NESDDPPSLP PKPTMQREHL FEKAVTPSDV GKLNRLVIPK QHAERCFPLD LALNAPCQTL  540
SFEDVSGKHW RFRYSYWNSS QSYVFTKGWS RFVKEKKLEA GDTVSFERGP NQELYIDFRR  600
RLNNQVAQML PGPSTSASDF ARNRPWVPRL PNPAGGLNPA VWHQLSLQNL QSSLESREQL  660
QMLYARQAFP QHMHSQQLSS FSSLQQQQQQ QQRQQQQHME SGVSLPHQTR TGDDFFSLLE  720
LGRRTDGGVA AMDRTVVGAS TTVVKPQQLL AEGPVSTPSA APAGASGGTR LFGVDLEKTS  780
SSSAQRSTER ESAVVSGLND WKSQTYAQQL QSLSRASSYH QGESSFQQQQ QQHLPTARIL  840
PSFQGSLHGQ SPAPVLMAAS AKQQQQQQQE QSSFMGLSIV RGRAGEQSPG TRLAASHSNL  900
QLASSTNMNS GSAARAAGAG AELQEAGART VVALGLAGPQ QFAGDSRKRK VGILESLKNS  960
GPADSYARDG APDTSLSLAQ HSESTTQVSF TTESSHFSSS TQPSGSTSTA EDREQKSPKR  1020
HCSPVQGAPT GSSKACAAGL PLTSTTTDTR GCRVDQKQQQ QQPPQPVASA NTTSGPPGAV  1080
VKCHLQWSPE KFLNISLANF HSVEGLKREL LQFTHLDFAQ GLDIVYKDKD GDIMLLSEHS  1140
WGLFKENVQE MWIRKTEQPQ QQRA*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5os9_A3e-464976014113B3 domain-containing transcription factor NGA1
5os9_B3e-464976014113B3 domain-containing transcription factor NGA1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00139DAPTransfer from AT1G13260Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAF5425550.0AF542555.1 Marchantia polymorpha PAC pMM2D3 RS/SP6 region hypothetical alliin lyase-like protein (M2D3.1), hypothetical protein (M2D3.2), M2D3.3 protein (M2D3.3), and hypothetical protein (M2D3.4) genes, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A2R6WND40.0A0A2R6WND4_MARPO; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP36516108
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G13260.15e-83related to ABI3/VP1 1