PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Mapoly0085s0068.1.p
Organism
Marchantia polymorpha
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Marchantiophyta; Marchantiopsida; Marchantiidae; Marchantiales; Marchantiaceae; Marchantia
Family C2H2
Protein Properties Length: 399aa    MW: 45378.1 Da    PI: 6.4319
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Mapoly0085s0068.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H213.50.00021158181123
                          EEETTTTEEESSHHHHHHHHHH.T CS
              zf-C2H2   1 ykCpdCgksFsrksnLkrHirt.H 23 
                          y C  Cg++++++  L+rH +  H
  Mapoly0085s0068.1.p 158 YICRLCGRMCKTNVALRRHFKQmH 181
                          89*****************98766 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.40.50.10106.0E-877134IPR029060PIN domain-like
SMARTSM003550.0063158181IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.99158186IPR007087Zinc finger, C2H2
PROSITE patternPS000280160181IPR007087Zinc finger, C2H2
CDDcd061672.01E-11187298No hitNo description
PfamPF019367.9E-5232301IPR021139NYN domain, limkain-b1-type
SuperFamilySSF538224.71E-5232347IPR028082Periplasmic binding protein-like I
Gene3DG3DSA:3.40.50.10106.0E-8233297IPR029060PIN domain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 399 aa     Download sequence    Send to blast
MSGAAFAPGI CPVPLSSFPT ENWDRHCTLK RFEKRFILAC TTTSLRRACS GGHYWNYAHR  60
PFGSEVEGIS EEQDYSGRRT VGVFWDLDNK PPVLVPPFDA AMRLRSLASE FGEVVDMVAY  120
ANKNAFTYVP PWVKEQRQER RLLDQLEVRG LVKVERPYIC RLCGRMCKTN VALRRHFKQM  180
HERERERKLA YLKTLRGKRR AKFLSDLAEQ EIKYKAAARR VLVPKSGYGL GSELRRAGVD  240
VRTVESKPQA ADEALKKHIA NCMNKGVECI CLLSDDSDFL GILKTAKSKG LKVVVVGDTF  300
TLEKVADFSF SWQDVASGKL FFEASLQRWL NDDAYQDDEG GHDEYGHGSS ARSFQTPEDV  360
ETDDDHSDNE EGPYVSEIDD DEEYEEYLAN LRWTLQQS*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024387619.11e-104uncharacterized protein LOC112288058
TrEMBLA0A2R6WJ170.0A0A2R6WJ17_MARPO; Uncharacterized protein
STRINGPP1S95_121V6.11e-104(Physcomitrella patens)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP30481420
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G12240.17e-82C2H2 family protein