PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Mapoly0085s0092.1.p
Organism
Marchantia polymorpha
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Marchantiophyta; Marchantiopsida; Marchantiidae; Marchantiales; Marchantiaceae; Marchantia
Family MYB
Protein Properties Length: 692aa    MW: 75720.5 Da    PI: 8.1531
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Mapoly0085s0092.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding40.28e-13525571148
                          TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
      Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                          +g W   +d ll+++v+ +G+++W++Ia  m  +R +kqc++rw ++l
  Mapoly0085s0092.1.p 525 KGHWGIADDRLLIKLVNTYGTRRWSLIATFMS-NRLGKQCRERWVNHL 571
                          67899999************************.************996 PP
2Myb_DNA-binding56.75.6e-18578619245
                          SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS
      Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 
                            WT eE++llv+a++ +G++ W+ Ia++++ gRt++++k++w+
  Mapoly0085s0092.1.p 578 EDWTHEEEQLLVRAHAAFGNK-WSVIAKMLP-GRTDNSIKNHWH 619
                          67*******************.*********.***********7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129415.026520571IPR017930Myb domain
SMARTSM007176.9E-12524573IPR001005SANT/Myb domain
SuperFamilySSF466896.5E-29525618IPR009057Homeodomain-like
PfamPF002492.1E-12525571IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.8E-22526577IPR009057Homeodomain-like
CDDcd001673.96E-11532571No hitNo description
PROSITE profilePS5129425.533572626IPR017930Myb domain
SMARTSM007176.9E-17576624IPR001005SANT/Myb domain
PfamPF002492.4E-16577619IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.603.5E-23578625IPR009057Homeodomain-like
CDDcd001675.69E-13580619No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 692 aa     Download sequence    Send to blast
MAEDSPSCSA TADLKSQRLH EQPQSPVFPI PVQACNFQLL HEEGPQFSAC ERRTEHYTAF  60
TQTQGVRFSK AEDDGMEMNC QAGRLNPDTS PHARPNSMAS NIQLHLPIDS MSQPVPASNP  120
GTGMPTARYF PGSSHLVVVD GVGVQPQWGT DHPSLLSCWY EQPRLRPSTT FQHSIWQSHR  180
TCQHAPAGTL VQHPHFHSNC WYPAFPLLNI NHQSPLVIPN TNAAMTSSER VAPRLWGVSS  240
PVYPVPAHGP GPVPSPRVPL ASCPTPHKLS ALFSPPRETN GSSVSYSSGL QQSAESAFGY  300
VKHESQEATN VHGQATRGSS FPVIPSPPIQ PFFPQIVARE QQLGAPSTEA DHWEGKSIHA  360
RHHCHVENDD SSLGQSKSSA VCTTATSDRS AVNCFQDCPE NPSLFRSSVS APSSMKCEGW  420
IKGPVNCTMQ TSLRQPEVYL GSSPHLVVLS PALNAYTANS PGLICSPVNE EYIWNSLQSG  480
QHSRETKTSD PSKTTNDFSS LPSSGRETVA VASEGRTTPQ RPCGKGHWGI ADDRLLIKLV  540
NTYGTRRWSL IATFMSNRLG KQCRERWVNH LQPNIKKEDW THEEEQLLVR AHAAFGNKWS  600
VIAKMLPGRT DNSIKNHWHA ALRKKGRHGP FRPSLLRDYI QRQTGVTARG AKTQNAASLD  660
LPSSVSDESV SQSAGDIGSQ RHDLQTGSNL R*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A2e-365256257107B-MYB
1mse_C2e-365256254104C-Myb DNA-Binding Domain
1msf_C2e-365256254104C-Myb DNA-Binding Domain
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A2R6WJ570.0A0A2R6WJ57_MARPO; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP5171784
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G18770.17e-40myb domain protein 98