PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Mapoly0086s0046.1.p
Organism
Marchantia polymorpha
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Marchantiophyta; Marchantiopsida; Marchantiidae; Marchantiales; Marchantiaceae; Marchantia
Family NAC
Protein Properties Length: 524aa    MW: 58408.7 Da    PI: 5.7741
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Mapoly0086s0046.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM102.94.4e-32692141128
                  NAM   1 lppGfrFhPtdeelvveyLkkkvegkk....leleevikevd....iykvePwdLpkkvkaeekewyfFskrdkkyatgkrknra..... 77 
                          lp+G+rF+P+deel+ ++L++kv   k     +++++i+++d    i++++P++Lp  vk++ ++ +fF+k +k+y+tg+rk+r+     
  Mapoly0086s0046.1.p  69 LPAGVRFDPSDEELL-RHLAAKVGVGKevshPRIDDFISHLDgndgICQTHPENLP-GVKTDGSSRHFFHKPAKAYTTGTRKRRKihned 156
                          799************.899999987776776555666777766667**********.677888999******************845555 PP

                  NAM  78 ...tksgyWkatgkdkevlskkgelvglkktLvfy.....kgrapkgektdWvmheyrl 128
                               + +W++tgk+++vl+ +g++ g kk++v+y      +++ k+ekt+W++h+y+l
  Mapoly0086s0046.1.p 157 eesGVETRWHKTGKTRPVLD-GGQHLGWKKIMVLYrnlysGKKKAKSEKTNWILHQYHL 214
                          44322677************.99************6666435788889*********98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.01E-3661233IPR003441NAC domain
PROSITE profilePS5100533.169233IPR003441NAC domain
PfamPF023654.2E-1370214IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:2000652Biological Processregulation of secondary cell wall biogenesis
GO:0005634Cellular Componentnucleus
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 524 aa     Download sequence    Send to blast
MKNRDHRDRW GRFMDQLVRQ IDNATHQRND AYSLAQDDTT ALPGLEVRED CPSCGHHVGR  60
RTAMDWVGLP AGVRFDPSDE ELLRHLAAKV GVGKEVSHPR IDDFISHLDG NDGICQTHPE  120
NLPGVKTDGS SRHFFHKPAK AYTTGTRKRR KIHNEDEESG VETRWHKTGK TRPVLDGGQH  180
LGWKKIMVLY RNLYSGKKKA KSEKTNWILH QYHLGPEEEE RDGELVVCKV FFQKQPRQCT  240
GGKQYDGVFA EGNSSKAETC QPQPRSNREI VVGASVSDVS RGTLITPKRD APVRPQFSRH  300
RTREASPPVQ APPESVTTRT PTQSGRGSEM TVMGKSDHLT SELTSTLGIS HRLPQSLTPC  360
VKTGSLQSGG LVQSVPFEEL FSENGSPDLY EEVSTSGKSC QNENAMAAVE YPPRDDYHEQ  420
PYPVMDTEGN VIGLTDLECD EELLPISWDW DANLDIEGGG GVDGLLDTPY HFNPHTDYFY  480
TFDEYLLSTP PAIFPDLKLT SQEASEVMRS IDPNDNSDSL SST*
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00460DAPTransfer from AT4G29230Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A2R6WIS10.0A0A2R6WIS1_MARPO; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP5251585
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G28500.12e-79NAC domain containing protein 73