PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Mapoly0092s0005.1.p
Organism
Marchantia polymorpha
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Marchantiophyta; Marchantiopsida; Marchantiidae; Marchantiales; Marchantiaceae; Marchantia
Family MYB
Protein Properties Length: 232aa    MW: 26190 Da    PI: 9.3859
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Mapoly0092s0005.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding56.56.3e-18110154348
                          SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
      Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                           WTte+de l  av+++ gg+Wk+Ia+ ++ +R++ qc +rwqk+l
  Mapoly0092s0005.1.p 110 VWTTEDDETLQAAVEKFKGGNWKKIAASLP-NRSDDQCLHRWQKVL 154
                          6*****************************.************986 PP
2Myb_DNA-binding51.13.1e-16160199141
                          TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHH CS
      Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqck 41 
                          +g W +eEd+ l+++v+++G+++W++Iar ++ gRt+kqc+
  Mapoly0092s0005.1.p 160 KGYWNKEEDDELLELVHKFGTKSWAAIARSLP-GRTGKQCR 199
                          689*****************************.*******9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466894.81E-1498156IPR009057Homeodomain-like
PROSITE profilePS5129422.572103158IPR017930Myb domain
SMARTSM007175.7E-14107156IPR001005SANT/Myb domain
PfamPF002491.5E-15110154IPR001005SANT/Myb domain
CDDcd001672.68E-13111154No hitNo description
Gene3DG3DSA:1.10.10.605.3E-21111161IPR009057Homeodomain-like
SuperFamilySSF466897.85E-21138202IPR009057Homeodomain-like
PROSITE profilePS5129414.37159207IPR017930Myb domain
SMARTSM007172.0E-12159208IPR001005SANT/Myb domain
PfamPF002491.0E-15160199IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.4E-18162201IPR009057Homeodomain-like
CDDcd001673.96E-14163200No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 232 aa     Download sequence    Send to blast
MSHGSLFFFG ELNSMTGDNE ISNHLYVLTP RSIHRPSKIC ASDPSTGSNL EKMEGSSLTL  60
PKLPLRRCLQ DISNSSEPNL PSAAVVDFPL DKKGKKQRVY QLRPRKPSTV WTTEDDETLQ  120
AAVEKFKGGN WKKIAASLPN RSDDQCLHRW QKVLRPTLVK GYWNKEEDDE LLELVHKFGT  180
KSWAAIARSL PGRTGKQCRE SCVSKMVLIY MFPYLIFSAK YTIDGNFEVH V*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h88_C2e-30108200698MYB PROTO-ONCOGENE PROTEIN
1h89_C2e-30108200698MYB PROTO-ONCOGENE PROTEIN
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that binds 5'-AACGG-3' motifs in gene promoters (By similarity). Transcription repressor that regulates organ growth. Binds to the promoters of G2/M-specific genes and to E2F target genes to prevent their expression in post-mitotic cells and to restrict the time window of their expression in proliferating cells (PubMed:26069325). {ECO:0000250|UniProtKB:Q94FL9, ECO:0000269|PubMed:26069325}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Slightly induced by ethylene and salicylic acid (SA). {ECO:0000269|PubMed:16463103}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
SwissprotQ6R0323e-35MB3R5_ARATH; Transcription factor MYB3R-5
TrEMBLA0A2R6WGR31e-173A0A2R6WGR3_MARPO; Uncharacterized protein
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G02320.21e-37myb domain protein 3r-5
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Kobayashi K, et al.
    Transcriptional repression by MYB3R proteins regulates plant organ growth.
    EMBO J., 2015. 34(15): p. 1992-2007
    [PMID:26069325]
  3. Chen P, et al.
    Arabidopsis R1R2R3-Myb proteins are essential for inhibiting cell division in response to DNA damage.
    Nat Commun, 2017. 8(1): p. 635
    [PMID:28935922]