PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Mapoly0092s0058.1.p
Organism
Marchantia polymorpha
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Marchantiophyta; Marchantiopsida; Marchantiidae; Marchantiales; Marchantiaceae; Marchantia
Family ERF
Protein Properties Length: 415aa    MW: 42421.5 Da    PI: 4.8632
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Mapoly0092s0058.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP259.48.4e-19217266255
                  AP2   2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                          +++GVr+++ +g+W+AeIrdp     +  r++lg+f t+e+Aa+a++ a+++++g
  Mapoly0092s0058.1.p 217 HFRGVRRRP-WGKWAAEIRDPE----KgVRVWLGTFPTPEKAARAYDCAARRIRG 266
                          69*******.**********73....24*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.101.6E-31216276IPR001471AP2/ERF domain
SuperFamilySSF541711.11E-21217276IPR016177DNA-binding domain
CDDcd000186.94E-30217275No hitNo description
PROSITE profilePS5103224.184217274IPR001471AP2/ERF domain
PfamPF008479.4E-13217266IPR001471AP2/ERF domain
SMARTSM003801.7E-36217280IPR001471AP2/ERF domain
PRINTSPR003673.7E-10218229IPR001471AP2/ERF domain
PRINTSPR003673.7E-10240256IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009873Biological Processethylene-activated signaling pathway
GO:0034059Biological Processresponse to anoxia
GO:0071456Biological Processcellular response to hypoxia
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 415 aa     Download sequence    Send to blast
MTMVVADDGP VGGGDEWWHR KRSRSCFDDG GDDGAGAAAA AAGGAAAGGD DLGSARRART  60
PGSPDERFLA MRGGGAGGEE GGGGGGAGRA REEEEDDGAS VSCCCATSSS CGSTMRDAGA  120
DGAGGGEVLD PGVEKLDPKS SSLRDFGVSP ASGSASVAAA AIKDAAGKGP SLSSGSSCLS  180
SNSCASNKAT KVEAAAAPST AAAAGGAAPA AETTPRHFRG VRRRPWGKWA AEIRDPEKGV  240
RVWLGTFPTP EKAARAYDCA ARRIRGKKAK LNYPDENSPT KPLTKQVQKV VKKKPQSPVS  300
VVQGPLSSST ESNDSRVSPP ASREVAGEVD LASLDSGSVA DCLDSCSVGD GSTVTEVGGE  360
VEHQHAQYDT SHMEEFQIED KVRARDLWQW SSLEPLCFDY AIPLWTFDDL PNLS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A5e-20216274463ATERF1
3gcc_A5e-20216274463ATERF1
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00230DAPTransfer from AT1G72360Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMap-Retrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A176WP640.0A0A176WP64_MARPO; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP6161718
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72360.19e-28ERF family protein