PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Mapoly0093s0032.1.p
Organism
Marchantia polymorpha
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Marchantiophyta; Marchantiopsida; Marchantiidae; Marchantiales; Marchantiaceae; Marchantia
Family RAV
Protein Properties Length: 2172aa    MW: 236746 Da    PI: 8.6219
Description RAV family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Mapoly0093s0032.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B3413.3e-132333121496
                          T-EE--HHH.HTT.---..--SEEEEEETTS-EEEEEE..EEETTE.EEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEE CS
                   B3  14 grlvlpkkfaeeh.ggkkeesktltledesgrsWevkliyrkksgr.yvltkGWkeFvkangLkegDfvvFkldgrsefelvvkv 96 
                          g l++p  f++++ +g    +   tled +g +Wev+   + +sgr   lt+GW eF+++++ + gD+++++  +r+ f  +v++
  Mapoly0093s0032.1.p 233 GKLSFPVMFMKQFiKGR---EGVATLEDAKGAKWEVEWAAWEQSGRrLALTRGWPEFAESHRAQIGDVLLIEILSRDHF--KVRF 312
                          67999999998885333...3379**************776666666*************************8887888..5555 PP
2AP243.58.1e-14931981156
                  AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkklege 56 
                          s+y GVr ++ +g + AeIr p       +r +lg+f t+e Aa+a+++a++ ++ge
  Mapoly0093s0032.1.p 931 SQYVGVRKRP-WGAYGAEIRTP-----EgRRLWLGTFTTEEAAARAYDHAARLYRGE 981
                          78********.**********8.....55************************9997 PP
3AP2249.8e-0815971646356
                  AP2    3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56  
                           y GV   + +gr+ A I+ p+   ++k+ ++g +++ae Aa+a+++ +  ++ge
  Mapoly0093s0032.1.p 1597 YLGVQSTP-SGRYKAKIYLPK---VKKHLYVGMYDSAEVAARAYDEVAFTKRGE 1646
                           78998777.7*********83...36**********************999986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF056411.6E-52094IPR008395Agenet-like domain
Gene3DG3DSA:2.40.330.105.6E-15214315IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019368.24E-15214314IPR015300DNA-binding pseudobarrel domain
CDDcd100175.11E-15218314No hitNo description
SMARTSM010196.3E-9220316IPR003340B3 DNA binding domain
PROSITE profilePS5086312.351220316IPR003340B3 DNA binding domain
PfamPF023621.6E-11232312IPR003340B3 DNA binding domain
PfamPF138911.7E-12518580IPR025927Potential DNA-binding domain
CDDcd000181.45E-12931987No hitNo description
SuperFamilySSF541716.21E-16931988IPR016177DNA-binding domain
PfamPF008472.0E-7932981IPR001471AP2/ERF domain
PROSITE profilePS5103220.863932988IPR001471AP2/ERF domain
SMARTSM003803.1E-25932994IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.107.4E-24932988IPR001471AP2/ERF domain
PRINTSPR003675.8E-6933944IPR001471AP2/ERF domain
PRINTSPR003675.8E-6954970IPR001471AP2/ERF domain
SMARTSM003807.7E-1115961659IPR001471AP2/ERF domain
PROSITE profilePS5103213.89315961653IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.106.2E-1415961654IPR001471AP2/ERF domain
SuperFamilySSF541713.99E-1115971654IPR016177DNA-binding domain
CDDcd000187.81E-1415971654No hitNo description
PROSITE profilePS5103210.07217901856IPR001471AP2/ERF domain
SuperFamilySSF541713.07E-918001857IPR016177DNA-binding domain
SMARTSM003802.4E-418001862IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.6E-718091856IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 2172 aa     Download sequence    Send to blast
MADTVIDSTS PSRGRDFGPG DFVEVNGGLE VFRHAWVAAQ IIRVEEMQGF SRYLISYDSY  60
KDTLEHWLAC EEPDANISEA FDYPHGGTIR PRPPKQLELA LHEGDTSLIP FKEVCVNDTV  120
DAAIENAWWP GRIVKVMAKQ TLIALNDGRE VTMNMSKLRR HVDWTGDDWS LPGHEITFTL  180
IVEEDSKVTF RPYVGEGLLS PNRHMVTRLT KNMTTHVPSF ARALVKRCLG PAGKLSFPVM  240
FMKQFIKGRE GVATLEDAKG AKWEVEWAAW EQSGRRLALT RGWPEFAESH RAQIGDVLLI  300
EILSRDHFKV RFINSKLRRA IRSRSHSKQA KCKNRARPEK SRSDDDRKVK KTYGDTYSSK  360
KLNGASQPLR FEGGGEKTPS QSTQTASTTL EESSASDKTL YEQGGKSGKE DDFEEWDLQR  420
SSGYPSWRSL SQGHGSASEM TSLSSISRAR TNFRKHSIRG GQCPLPWASV TNGAQQTLSS  480
PVRPPKSGSA LPSKSPISGR TRFHQVVSRP NSSTVVYCQS TKSKCSQYCV QGHQFCLWHI  540
LEDPHAPYKQ CDYVEASSKD RCRFPVNLQI EDNRYCQMHN NNHGFTLSPQ TLKKQQGVER  600
PPIGEFTLLV LAATVANDVE VKEPPKIVRT VEANNYIQVR SISNDPKQVA MDIRKNSSTA  660
VITVSSKCAK ANGPGFVNSS GDKCRVVEEQ FLGRSCSTDE IIGELGALST FGQIRKEDLN  720
GTLNISKRLK SDHTGLPGST LDKNGLVCQR TAANAEQISA SKGRSPSTGA GLSEVLTLIP  780
GGATSSSKSA IDGALPLSKK PIMGIEKVCR SNPLFAQSSA VKKKSTLNNI LCPIDIGQMD  840
FSRVGLNCVP SRLSASSAIT GPKETVVKSP LWFFRSVDLG EMDPTRMGLK CSFGETKAAS  900
KLTMPKRKQK EDTVGPEASS DKLPGKRRFF SQYVGVRKRP WGAYGAEIRT PEGRRLWLGT  960
FTTEEAAARA YDHAARLYRG EGAMTNFNSV GYPVEPVDEK SGLKEAPKKR RSSNNKRKDD  1020
ESASSPVGEG KRPKVQKAEA QSAGSGTPPT ENFVHTEASE AGKFGNFLVD QGNQNSEGGT  1080
SDTSLAAQQE KEGITSLQTP EGLSSAGCAH VPSTGEDFEA SRSAAGDRGV QTVDSEQMKE  1140
TKAKIGEEAD LIVEHTDTSK IAELPEDGYQ ATEHDMQVDS IHAGSCGGNT VSRPSRQKKF  1200
KRISTTVVHD SDSSSGNSSD ERKECEETSV KEEDATLSGE ESPQSGSSRL ELTEEEGVQA  1260
KMQGDIHEEI TRKGKAKDLA QWFTKQRLGP GKGSKENSQC KTIKDDFSEV PEKETSLGKS  1320
NKAPSSQMEK MQPRKEEGRG PEKNKVSTEG KRAVSADQPP VQKSSKESKS SIKVAGSKSV  1380
PPESSLPSSK IVTKKAVPSV LESEKELTTT KIATKKGSSS ANRSSKKPSP ASGEATKAQQ  1440
DGGETHQPVK RAPRGDFLSR IGADCYIESE YARVYKTTSK RRAMLDKSGT NQAAAAAAAA  1500
AAASDKDSTE QSKGSSQRSA PHQAKGNPSA TDVSTPSKHK KDEIADGDSI HNEDDDTTRS  1560
SGGNSSGAKS KRKEADNSGV TNHSKSGKKK LLERTSYLGV QSTPSGRYKA KIYLPKVKKH  1620
LYVGMYDSAE VAARAYDEVA FTKRGECVRL NFPEEVPLLR ARLKEATNED AVKSKKNEVP  1680
LKKSLIQRTN FGSYHAMLYD PGVKKYRFLG DFTSVKEATK ACDAAFSSQW DDASADPPDE  1740
EEDSDNEKLN TFSEKRPRTS YGGGSPRSTT RSLRSNETSS PHDASESAKQ HDSKKPKQSE  1800
FKGVYCSGSK FQAIYYNPEN KKPTYIGTYL TAPEAAYAYD QIAYERFGES AVLNFSMDEF  1860
PDQVDNGDVY SRQGSDTNRI GELNTLASSA LKREGTDSVE VDAIATDFLK DLGMRKSLRR  1920
GKDLKSNLAS GSIQGSHDGG SKGSGEKRRM SVREDAESAR DSTGGDDEEA DQRESSDTDN  1980
LPCTKTHWCL ETEESGKKIH ASYHNPVQKK SYSLGAFDSF EKAALAFEEK VNEELQLSRA  2040
IVSAAEVRKA SGKQTIESKV TEPALLDSHF STYEHDGTSS LTLQNTGASS GGEGPGAALD  2100
LDTGDDAPEV ALTMLSWASS KVAPLAAIDG KKVRKLNRPL DQGAPDDLAL ALDRRPAVLG  2160
VKAPEKTWLS L*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A3e-139319871371Ethylene-responsive transcription factor ERF096
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A2R6WGI70.0A0A2R6WGI7_MARPO; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP1236736
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G27950.12e-11cytokinin response factor 4