PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Mapoly0097s0062.1.p
Organism
Marchantia polymorpha
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Marchantiophyta; Marchantiopsida; Marchantiidae; Marchantiales; Marchantiaceae; Marchantia
Family LBD
Protein Properties Length: 146aa    MW: 16787.6 Da    PI: 8.8124
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Mapoly0097s0062.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF26099.43.5e-3114111299
               DUF260   2 CaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlk 91 
                          C+aCk+lr+kC+ dC+lap+fpa+ p ++ +vh + G++nv+k+l++lpe  r da+++l+ eAear++dPv G+ g i + ++++ +l+
  Mapoly0097s0062.1.p  14 CEACKFLRKKCTYDCPLAPHFPADGPLRYPIVHTILGRHNVTKILQNLPELSRADAATTLYLEAEARIKDPVCGCSGEIYRTEKRITELQ 103
                          ****************************************************************************************** PP

               DUF260  92 aelallke 99 
                          ae+ ++++
  Mapoly0097s0062.1.p 104 AEIYRAEK 111
                          **988876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089121.52512113IPR004883Lateral organ boundaries, LOB
PfamPF031956.4E-3114109IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 146 aa     Download sequence    Send to blast
MEPRKKQRPS LFTCEACKFL RKKCTYDCPL APHFPADGPL RYPIVHTILG RHNVTKILQN  60
LPELSRADAA TTLYLEAEAR IKDPVCGCSG EIYRTEKRIT ELQAEIYRAE KRITELMQRI  120
DILEEKIRKR PNEEGMVAVT LQLFT*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A1e-251411812113LOB family transfactor Ramosa2.1
5ly0_B1e-251411812113LOB family transfactor Ramosa2.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A176VP291e-102A0A176VP29_MARPO; Uncharacterized protein
TrEMBLA0A2R6WFG71e-102A0A2R6WFG7_MARPO; Uncharacterized protein
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G07900.13e-34LOB domain-containing protein 1