PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Mapoly0100s0033.1.p
Organism
Marchantia polymorpha
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Marchantiophyta; Marchantiopsida; Marchantiidae; Marchantiales; Marchantiaceae; Marchantia
Family bHLH
Protein Properties Length: 453aa    MW: 49645.7 Da    PI: 6.9046
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Mapoly0100s0033.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH37.83.4e-12275322355
                          HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                  HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                          + h ++Er+RR+++ ++f  L  ++P +     kK++Ka++L  A++Y+ksLq
  Mapoly0100s0033.1.p 275 QDHIMAERKRREKLSQRFIALSAIVPGL-----KKMDKASVLGDAIKYVKSLQ 322
                          5699************************.....9******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.332272321IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.0E-17276332IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474595.23E-17276333IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000109.1E-10276322IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000835.91E-14277326No hitNo description
SMARTSM003534.1E-15278327IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 453 aa     Download sequence    Send to blast
MEVVSTPAGN GAKQWLSELG LEEPSLVRHL DSLFLPTSNQ YQSVKGYNNL NSYDLGGSFL  60
NVKQRDASPV TMNNTFTSTG YSSQWDALLN NERPAKMPKT ISWDGSFSNQ GMGNSLTHQP  120
LLPLIFSHKQ QQQHHEPQIQ HQQQHHQHQH NHMNQFFSPQ QQLCQGIDGF VASLPKLSDD  180
LHDSVAPRTP TMEIGGSQVL GGGAQDTCNS DVHSVEAMSM SSTCNRDSSP IADSFRGKRK  240
PEFFPSPTDM RVQRPPPMAT TRAPSPPSKA TGHTQDHIMA ERKRREKLSQ RFIALSAIVP  300
GLKKMDKASV LGDAIKYVKS LQDRVQKLEE QAPKKNVSSI AVVKNGKDSK GSGSDGETGA  360
ESEVVESGET PDIEARVNDK NVLIKMHCEM KIGSVAKCIS ELEKLHLIVL NANILSFTNT  420
SVDLTLSAQT EDGHEVTADE IVAALQSFFK TL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5gnj_A3e-14276331863Transcription factor MYC2
5gnj_B3e-14276331863Transcription factor MYC2
5gnj_E3e-14276331863Transcription factor MYC2
5gnj_F3e-14276331863Transcription factor MYC2
5gnj_G3e-14276331863Transcription factor MYC2
5gnj_I3e-14276331863Transcription factor MYC2
5gnj_M3e-14276331863Transcription factor MYC2
5gnj_N3e-14276331863Transcription factor MYC2
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1280285ERKRRE
2281286RKRREK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A2R6WEP70.0A0A2R6WEP7_MARPO; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP6561573
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37850.14e-48bHLH family protein