PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Mapoly0103s0036.1.p
Organism
Marchantia polymorpha
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Marchantiophyta; Marchantiopsida; Marchantiidae; Marchantiales; Marchantiaceae; Marchantia
Family LSD
Protein Properties Length: 120aa    MW: 12657.5 Da    PI: 7.3565
Description LSD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Mapoly0103s0036.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-LSD142.97.8e-142549125
              zf-LSD1  1 CggCrtlLsYPrGApsVRCalCdtV 25
                         CggC+tlL YP+G+ +VRCalC +V
  Mapoly0103s0036.1.p 25 CGGCGTLLVYPYGSNHVRCALCSFV 49
                         **********************988 PP
2zf-LSD141.71.9e-135882125
              zf-LSD1  1 CggCrtlLsYPrGApsVRCalCdtV 25
                         Cg+C+ lL+YP+GA +V+C++C+++
  Mapoly0103s0036.1.p 58 CGSCGLLLMYPAGAHAVKCSSCQFI 82
                         ***********************86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
TIGRFAMsTIGR010535.8E-112250IPR005735Zinc finger, LSD1-type
PfamPF069437.4E-122549IPR005735Zinc finger, LSD1-type
TIGRFAMsTIGR010531.2E-105583IPR005735Zinc finger, LSD1-type
PfamPF069431.8E-105882IPR005735Zinc finger, LSD1-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000303Biological Processresponse to superoxide
GO:0001666Biological Processresponse to hypoxia
GO:0002240Biological Processresponse to molecule of oomycetes origin
GO:0009626Biological Processplant-type hypersensitive response
GO:0009862Biological Processsystemic acquired resistance, salicylic acid mediated signaling pathway
GO:0010104Biological Processregulation of ethylene-activated signaling pathway
GO:0010310Biological Processregulation of hydrogen peroxide metabolic process
GO:0010602Biological Processregulation of 1-aminocyclopropane-1-carboxylate metabolic process
GO:0010618Biological Processaerenchyma formation
GO:0043069Biological Processnegative regulation of programmed cell death
Sequence ? help Back to Top
Protein Sequence    Length: 120 aa     Download sequence    Send to blast
MSGTLIPYPT QQQQQHQHQQ CQLYCGGCGT LLVYPYGSNH VRCALCSFVT NAPAHLNCGS  60
CGLLLMYPAG AHAVKCSSCQ FITCLAPQTQ TVIVENPMTL DDSGQLVSSV AVGITTKHA*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009108471.17e-27PREDICTED: protein LSD1-like isoform X2
TrEMBLA0A2R6WDZ01e-80A0A2R6WDZ0_MARPO; Uncharacterized protein
STRINGBra020924.1-P5e-26(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP11461753
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G20380.76e-22LSD family protein