PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Mapoly0105s0006.1.p
Organism
Marchantia polymorpha
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Marchantiophyta; Marchantiopsida; Marchantiidae; Marchantiales; Marchantiaceae; Marchantia
Family NF-YB
Protein Properties Length: 172aa    MW: 18972.5 Da    PI: 4.2582
Description NF-YB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Mapoly0105s0006.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YB47.54.3e-155107897
                NF-YB   8 lPianvsrimkkvlPana.......k......iskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplk 84 
                          lP anv ri+k  l + a       k      i kda     e +  fi ++++ a+d c++ kr+tin++d+l a+ ++ f ++vepl+
  Mapoly0105s0006.1.p   5 LPRANVKRIVKAKLLELAaahygdeKtsrdlpIHKDALLAFSESAKIFIHYLSATANDICRESKRQTINAEDVLRAVEEIEFGEFVEPLR 94 
                          888999999987664322111222232233336778888899************************************************ PP

                NF-YB  85 vylkkyrelegek 97 
                            l+ yre +++k
  Mapoly0105s0006.1.p  95 SALEVYREENQNK 107
                          ********88776 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF471133.64E-255111IPR009072Histone-fold
Gene3DG3DSA:1.10.20.106.5E-365162IPR009072Histone-fold
PfamPF008085.9E-93781IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 172 aa     Download sequence    Send to blast
MSEDLPRANV KRIVKAKLLE LAAAHYGDEK TSRDLPIHKD ALLAFSESAK IFIHYLSATA  60
NDICRESKRQ TINAEDVLRA VEEIEFGEFV EPLRSALEVY REENQNKKAQ RGFAANGGKR  120
KRRASDISAL NGNEDGDEAD NQGEEDEGEG EDLEDDKEEE ADGEDGSDTS S*
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024366136.12e-45DNA polymerase epsilon subunit 3-like
RefseqXP_024366137.12e-45DNA polymerase epsilon subunit 3-like
TrEMBLA0A176WQI91e-118A0A176WQI9_MARPO; Uncharacterized protein
TrEMBLA0A2R6WDF51e-118A0A2R6WDF5_MARPO; Uncharacterized protein
STRINGPP1S217_34V6.18e-45(Physcomitrella patens)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP78621516
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G27470.13e-33nuclear factor Y, subunit B11