PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Mapoly0107s0039.1.p

Organism

Marchantia polymorpha

Taxonomic ID

3197

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Marchantiophyta; Marchantiopsida; Marchantiidae; Marchantiales; Marchantiaceae; Marchantia

Family

Trihelix

Protein Properties

Length: 364aa MW: 40019.1 Da PI: 6.6055

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Mapoly0107s0039.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	52.4	1.4e-16	83	170	2	86
trihelix 2 WtkqevlaLiearremeerlrrgklkkplWeevskkm....rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 W++ v L+e+++e+ +l+rg+l+ ++We+v++++ + ++++qCk k+enl++ryk +k+++ t +ss +p+f +++ Mapoly0107s0039.1.p 83 WSECAVNYLLEVYEEKYVSLSRGNLRSNDWEDVARYVnfkcEGSRSAKTAEQCKWKMENLKRRYKVEKQRQAA-TGAVSSLWPFFPRMD 170 99*********************************99766666789******************998.699999******8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF13837	9.5E-19	82	172	No hit	No description
PROSITE profile	PS50912	9.387	232	281	IPR009039	EAR
Gene3D	G3DSA:1.10.287.1080	3.1E-30	235	330	No hit	No description
SuperFamily	SSF101386	6.69E-38	235	353	No hit	No description
CDD	cd11537	8.02E-47	241	331	No hit	No description
Pfam	PF12643	1.7E-9	269	348	IPR025984	MazG-like domain

Sequence ? help Back to Top
Protein Sequence Length: 364 aa Download sequence Send to blast
MASGGGAEQH LPHHLQQHAG SVDVQSVVGV SGMGDSPGEG EGQAGDLVVG GHQPPASEGK 60 GIKKAKREVV GGEEKKKENP TDWSECAVNY LLEVYEEKYV SLSRGNLRSN DWEDVARYVN 120 FKCEGSRSAK TAEQCKWKME NLKRRYKVEK QRQAATGAVS SLWPFFPRMD EMLISSFKFV 180 ATSPENGSGD AEDHPANVSV VSFSPQRVNR GAHAKAEVGF KKESDVYGSC AVGSVTIKEL 240 QKRMADFARE RDWDQFHSPR NLLLALVGEV GELSEIFQWK GEVPRGLPGW NVSEKEHLGE 300 ELSDVLLYLV RLADICEVDL GQAALRKIKK NAKKYPVELC KGTARKYTPC ENPNGDDVAL 360 DKI*

Sequence ? help Back to Top

Protein Sequence Length: 364 aa Download sequence Send to blast

MASGGGAEQH LPHHLQQHAG SVDVQSVVGV SGMGDSPGEG EGQAGDLVVG GHQPPASEGK  60
GIKKAKREVV GGEEKKKENP TDWSECAVNY LLEVYEEKYV SLSRGNLRSN DWEDVARYVN  120
FKCEGSRSAK TAEQCKWKME NLKRRYKVEK QRQAATGAVS SLWPFFPRMD EMLISSFKFV  180
ATSPENGSGD AEDHPANVSV VSFSPQRVNR GAHAKAEVGF KKESDVYGSC AVGSVTIKEL  240
QKRMADFARE RDWDQFHSPR NLLLALVGEV GELSEIFQWK GEVPRGLPGW NVSEKEHLGE  300
ELSDVLLYLV RLADICEVDL GQAALRKIKK NAKKYPVELC KGTARKYTPC ENPNGDDVAL  360
DKI*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
2a3q_A	4e-38	236	348	30	142	hypothetical protein
2a3q_B	4e-38	236	348	30	142	hypothetical protein
2q4p_A	4e-38	236	348	30	142	Protein RS21-C6
2q4p_B	4e-38	236	348	30	142	Protein RS21-C6

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
TrEMBL	A0A2R6WD61	0.0	A0A2R6WD61_MARPO; Uncharacterized protein

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G10030.2	6e-25	Trihelix family protein

Link Out ? help Back to Top
Phytozome	Mapoly0107s0039.1.p