PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Mapoly0110s0001.1.p

Organism

Marchantia polymorpha

Taxonomic ID

3197

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Marchantiophyta; Marchantiopsida; Marchantiidae; Marchantiales; Marchantiaceae; Marchantia

Family

C2H2

Protein Properties

Length: 131aa MW: 14850.5 Da PI: 7.55

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Mapoly0110s0001.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	23.2	1.8e-07	60	81	2	23
EETTTTEEESSHHHHHHHHHHT CS zf-C2H2 2 kCpdCgksFsrksnLkrHirtH 23 C+ Cgk F+r nL+ H+r+H Mapoly0110s0001.1.p 60 FCELCGKGFKRDANLRMHMRSH 81 6********************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF57667	6.57E-7	56	83	No hit	No description
Gene3D	G3DSA:3.30.160.60	6.6E-7	56	83	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profile	PS50157	12.632	59	86	IPR007087	Zinc finger, C2H2
Pfam	PF12171	2.0E-5	59	81	IPR022755	Zinc finger, double-stranded RNA binding
SMART	SM00355	0.0014	59	81	IPR015880	Zinc finger, C2H2-like
PROSITE pattern	PS00028	0	61	81	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003676	Molecular Function	nucleic acid binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 131 aa Download sequence Send to blast
MFPSNSASGS HGSEDQEMGV RSRRGASRYE FDDGEGENLV DGYQLVELDG QEILAEHTHF 60 CELCGKGFKR DANLRMHMRS HGDEYKTPEA LARPQKPIDE QTPEIPKRFS SPHVGCKRNV 120 RFCVRLRSRR *

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor. Together with STOP2, plays a critical role in tolerance to major stress factors in acid soils such as proton H(+) and aluminum ion Al(3+). Required for the expression of genes in response to acidic stress (e.g. ALMT1 and MATE), and Al-activated citrate exudation. {ECO:0000269\|PubMed:17535918, ECO:0000269\|PubMed:18826429, ECO:0000269\|PubMed:19321711, ECO:0000269\|PubMed:23935008}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By shock H(+) and Al(3+) treatments. {ECO:0000269\|PubMed:17535918}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_022018788.1	6e-32	protein SENSITIVE TO PROTON RHIZOTOXICITY 1-like
Refseq	XP_027091971.1	7e-32	protein SENSITIVE TO PROTON RHIZOTOXICITY 1-like isoform X2
Refseq	XP_027094878.1	7e-32	protein SENSITIVE TO PROTON RHIZOTOXICITY 1-like isoform X2
Refseq	XP_027094902.1	7e-32	protein SENSITIVE TO PROTON RHIZOTOXICITY 1-like isoform X2
Refseq	XP_027168469.1	7e-32	protein SENSITIVE TO PROTON RHIZOTOXICITY 1 isoform X2
Swissprot	Q9C8N5	5e-30	STOP1_ARATH; Protein SENSITIVE TO PROTON RHIZOTOXICITY 1
TrEMBL	A0A2R6WCC3	5e-92	A0A2R6WCC3_MARPO; Uncharacterized protein
STRING	XP_010256329.1	3e-31	(Nelumbo nucifera)
STRING	EFJ14225	1e-32	(Selaginella moellendorffii)
STRING	EFJ20089	1e-32	(Selaginella moellendorffii)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G34370.3	6e-33	C2H2 family protein

Link Out ? help Back to Top
Phytozome	Mapoly0110s0001.1.p

Publications ? help Back to Top
Kobayashi Y, et al. Molecular and physiological analysis of Al³⁺ and H⁺ rhizotoxicities at moderately acidic conditions. Plant Physiol., 2013. 163(1): p. 180-92 [PMID:23839867] Yokosho K,Yamaji N,Ma JF Global transcriptome analysis of Al-induced genes in an Al-accumulating species, common buckwheat (Fagopyrum esculentum Moench). Plant Cell Physiol., 2014. 55(12): p. 2077-91 [PMID:25273892] Geng X, et al. LEUNIG_HOMOLOG transcriptional co-repressor mediates aluminium sensitivity through PECTIN METHYLESTERASE46-modulated root cell wall pectin methylesterification in Arabidopsis. Plant J., 2017. 90(3): p. 491-504 [PMID:28181322] Balzergue C, et al. Low phosphate activates STOP1-ALMT1 to rapidly inhibit root cell elongation. Nat Commun, 2017. 8: p. 15300 [PMID:28504266] Pelagio-Flores R,Esparza-Reynoso S,Garnica-Vergara A,López-Bucio J,Herrera-Estrella A Trichoderma-Induced Acidification Is an Early Trigger for Changes in Arabidopsis Root Growth and Determines Fungal Phytostimulation. Front Plant Sci, 2017. 8: p. 822 [PMID:28567051] Jiang F, et al. Identification and characterization of suppressor mutants of stop1. BMC Plant Biol., 2017. 17(1): p. 128 [PMID:28738784] Daspute AA, et al. Transcriptional Regulation of Aluminum-Tolerance Genes in Higher Plants: Clarifying the Underlying Molecular Mechanisms. Front Plant Sci, 2017. 8: p. 1358 [PMID:28848571] Sharma A,Wai CM,Ming R,Yu Q Diurnal Cycling Transcription Factors of Pineapple Revealed by Genome-Wide Annotation and Global Transcriptomic Analysis. Genome Biol Evol, 2017. 9(9): p. 2170-2190 [PMID:28922793] Zhang Y, et al. The Cell Cycle Checkpoint Regulator ATR Is Required for Internal Aluminum Toxicity-Mediated Root Growth Inhibition in Arabidopsis. Front Plant Sci, 2018. 9: p. 118 [PMID:29491872]