PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Mapoly0110s0028.1.p
Organism
Marchantia polymorpha
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Marchantiophyta; Marchantiopsida; Marchantiidae; Marchantiales; Marchantiaceae; Marchantia
Family CO-like
Protein Properties Length: 404aa    MW: 43251.2 Da    PI: 5.2626
Description CO-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Mapoly0110s0028.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box231.7e-07343438
             zf-B_box  4 rkCpeHeekelqlfCedCqqllCedClleeHkg.......Ht 38
                         + C+ +++  +  +C+ +  +lC+ C ++ H g       H+
  Mapoly0110s0028.1.p  3 KPCDACQSSSAVVYCRADAAFLCAGCDTKVH-GanklaqrHE 43
                         67******99*********************.4466777776 PP
2zf-B_box23.11.6e-074590342
             zf-B_box  3 erkCpeHeekelqlfCedCqqllCedClleeHkg......Htvvpl 42
                          ++C+ +e  ++   C+ +   lC  C + +H+       H+++p+
  Mapoly0110s0028.1.p 45 VWVCEVCEVAPAVVTCKADAAALCVACDTDIHSAnplarrHERTPV 90
                         689*****************************66888888998875 PP
3CCT71.61.9e-24336379144
                  CCT   1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 
                          Rea+++RYkeKrk+RkFeK+irY+sRKa+AesRpR+KGrF+k++
  Mapoly0110s0028.1.p 336 REARVMRYKEKRKNRKFEKTIRYASRKAYAESRPRIKGRFAKRN 379
                          9*****************************************86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003362.1E-10147IPR000315B-box-type zinc finger
PROSITE profilePS501199.84147IPR000315B-box-type zinc finger
PfamPF006432.6E-6344IPR000315B-box-type zinc finger
CDDcd000211.39E-7447No hitNo description
PROSITE profilePS5011910.3814390IPR000315B-box-type zinc finger
PfamPF006434.0E-64490IPR000315B-box-type zinc finger
CDDcd000216.86E-84690No hitNo description
SMARTSM003363.1E-94890IPR000315B-box-type zinc finger
PfamPF062031.9E-18336378IPR010402CCT domain
PROSITE profilePS5101716.777336378IPR010402CCT domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005622Cellular Componentintracellular
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 404 aa     Download sequence    Send to blast
MPKPCDACQS SSAVVYCRAD AAFLCAGCDT KVHGANKLAQ RHERVWVCEV CEVAPAVVTC  60
KADAAALCVA CDTDIHSANP LARRHERTPV TPFYECPGQS IKVAHISALV APQGGQGRDD  120
DADLDADEHS VAEEAASWLL PNPKPLTENN ILGDDKGSMG QGEMGSLVND DGDDDDLEPS  180
SFLVPSGGFS PNSTLSHKSD GMSMKHHKSK VEANAGDLFS DVDPYLDLDY ATVVGANPNL  240
GADSLVPVHS DHPAHSSPSM STGSGSFEGE AVCKAGYGYE SSLTHSMSSS SLDVGIVPDT  300
NALSDISTPY DGSQGHGFEF PPRMLHMAQV EPPMAREARV MRYKEKRKNR KFEKTIRYAS  360
RKAYAESRPR IKGRFAKRNP TDMSLQDMYP NVPDSGFGVV PAF*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024369143.11e-117zinc finger protein CONSTANS-LIKE 4-like
TrEMBLA0A176VKR80.0A0A176VKR8_MARPO; Uncharacterized protein
TrEMBLA0A2R6WCF50.0A0A2R6WCF5_MARPO; Uncharacterized protein
STRINGPP1S371_27V6.11e-117(Physcomitrella patens)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP6911767
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G24930.15e-72CONSTANS-like 4