PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Mapoly0119s0048.1.p
Organism
Marchantia polymorpha
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Marchantiophyta; Marchantiopsida; Marchantiidae; Marchantiales; Marchantiaceae; Marchantia
Family Trihelix
Protein Properties Length: 500aa    MW: 56609.6 Da    PI: 7.1621
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Mapoly0119s0048.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix69.18.6e-22138217286
             trihelix   2 WtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 
                          Wt+ e+l+Li++r+++e r+ ++ +k  lW+e++++++++ ++r ++qC++kwe+l   yk++++g k+r  e     p++d+l+
  Mapoly0119s0048.1.p 138 WTRPETLKLIRLRTDLEPRFAKSGRKTELWDEIAEALQRERITRDAQQCRDKWEKLTAGYKEVRDGVKDR--E---DNPFYDELH 217
                          ********************************************************************96..3...448999986 PP
2trihelix67.92.1e-21410489286
             trihelix   2 WtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 
                          W++ evl+Li++r em++r+ ++ ++++lWee ++ ++++g++r  kqC+ekw++l  +yk +++g++++  ++s   pyf +l+
  Mapoly0119s0048.1.p 410 WKRAEVLQLIKLRGEMDSRFVKSTRRAALWEELAELLAAQGIKRDGKQCREKWDKLMAEYKDVADGKRDQ--GES---PYFAELT 489
                          ********************************************************************94..555...9999997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500908.397130194IPR017877Myb-like domain
Gene3DG3DSA:1.10.10.602.2E-4133194IPR009057Homeodomain-like
SMARTSM007170.0019134196IPR001005SANT/Myb domain
CDDcd122039.00E-25136201No hitNo description
PfamPF138374.0E-19136218No hitNo description
PROSITE profilePS500908.339402466IPR017877Myb-like domain
Gene3DG3DSA:1.10.10.606.2E-5403467IPR009057Homeodomain-like
SMARTSM007170.038406468IPR001005SANT/Myb domain
CDDcd122032.19E-24408472No hitNo description
PfamPF138373.2E-18408490No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 500 aa     Download sequence    Send to blast
MFSSQTPLPP LARQPQTPLF HALPAPGHAS SREEDEEEEA PYHPDPLPPP QPEPLRERIP  60
PSPAREETMS PVERLEVPPP VAPSHSMSTV LALAAQPPIS PDLKVTENGN SGATGEADAD  120
AEEDKKRERE HKKRSKNWTR PETLKLIRLR TDLEPRFAKS GRKTELWDEI AEALQRERIT  180
RDAQQCRDKW EKLTAGYKEV RDGVKDREDN PFYDELHPLL SGKSLKRERE RDKDTFGSGK  240
EGAGRDYSKE LSRELVVDGF TRDIDKDGLY RGGARGRETF KDDDDDGDEA EARAPSRKKK  300
RGPKYITVTD LAAVQSLLEA VISRQQRFFR DLLDSMERKE QLREQIRQEK EDKWRAEERA  360
QRGIFNNAMI VLTQKLVGDR VSAVVPGVAG PLVVGSPEGP QGPKRRSKNW KRAEVLQLIK  420
LRGEMDSRFV KSTRRAALWE ELAELLAAQG IKRDGKQCRE KWDKLMAEYK DVADGKRDQG  480
ESPYFAELTA IIGRPPEAA*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024395857.10.0trihelix transcription factor GTL1-like
TrEMBLA0A2R6WAH20.0A0A2R6WAH2_MARPO; Uncharacterized protein
STRINGPP1S224_109V6.10.0(Physcomitrella patens)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP1063658
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G33240.11e-12GT-2-like 1