PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Mapoly0130s0035.1.p
Organism
Marchantia polymorpha
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Marchantiophyta; Marchantiopsida; Marchantiidae; Marchantiales; Marchantiaceae; Marchantia
Family Trihelix
Protein Properties Length: 465aa    MW: 50948.1 Da    PI: 4.8309
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Mapoly0130s0035.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix74.41.8e-23105203186
             trihelix   1 rWtkqevlaLiearremeerlrrgk............lkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkr.tsesss 77 
                          +Wt+++v++Li ++  ++e+++ +             +kk++W++vsk+m+e+g+ +sp+qC++k+++lnkryk+++++ +k+ ++++++
  Mapoly0130s0035.1.p 105 KWTDSMVKLLIGVVLFVGEDSSLDGsgegnkrksgilQKKGKWKSVSKVMMEKGCYVSPQQCEDKFNDLNKRYKRLNDILGKNtACNVVE 194
                          7**************7777777432244556778899**********************************************5599999 PP

             trihelix  78 tcpyfdqle 86 
                          + + +d ++
  Mapoly0130s0035.1.p 195 NPSTLDAMT 203
                          999999997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138378.4E-19103193No hitNo description
Sequence ? help Back to Top
Protein Sequence    Length: 465 aa     Download sequence    Send to blast
MEVDGKDAAG GGRGGGCESI SSDGGGVTGG LSLELVGKGK AGPGGGGGVG LLPKGLGNGL  60
IGAVAAAGGG AVSDEEDPSF EGDGGEGGQH GGGRNKKTSP WQRMKWTDSM VKLLIGVVLF  120
VGEDSSLDGS GEGNKRKSGI LQKKGKWKSV SKVMMEKGCY VSPQQCEDKF NDLNKRYKRL  180
NDILGKNTAC NVVENPSTLD AMTNLLPKAK EDVKKILSSK HLFYKEMAFY HSGNKAALST  240
DLEFQPSLQA VMLQGRELME SGRHMKDDMD EDDDDDDDDD DVDDEFDIAD GVEEDGDTIA  300
DLSDPYGKRR KLSKKLEEVE LGMAASGLHD YGKDMNGVEI VNTDIMNVLH ESSKASREHQ  360
QWMRNRTMQL EEQKVGLQAE AFNLEKQRFK WQKFSCKKDR ELERLRLENE RMKLENERIQ  420
LEIKQKELEM DNKRSEASMT SIALILDRLQ AREQNDLGRG QCVQ*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006434454.11e-114uncharacterized protein LOC18041979
TrEMBLA0A2R6W8C30.0A0A2R6W8C3_MARPO; Uncharacterized protein
STRINGXP_006434454.11e-114(Citrus clementina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP27961329
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G21200.11e-73sequence-specific DNA binding transcription factors