PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Mapoly0132s0029.1.p

Organism

Marchantia polymorpha

Taxonomic ID

3197

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Marchantiophyta; Marchantiopsida; Marchantiidae; Marchantiales; Marchantiaceae; Marchantia

Family

MYB

Protein Properties

Length: 202aa MW: 23715.1 Da PI: 9.6671

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Mapoly0132s0029.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	23.9	9.5e-08	28	50	3	25
SS-HHHHHHHHHHHHHTTTT-HH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWk 25 rWT+eEdell +av q+ ++W+ Mapoly0132s0029.1.p 28 RWTPEEDELLQEAVVQYKAKNWR 50 9*******************886 PP
2	Myb_DNA-binding	57.1	4.1e-18	63	108	1	47
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +g WT+eEd++ +++v +lG+++W+++ar+++ gR +kqc++rw++ Mapoly0132s0029.1.p 63 KGYWTKEEDQKMLELVGMLGTKRWAAVARCLP-GRIGKQCRERWYNQ 108 789***************************.**********96 PP
3	Myb_DNA-binding	42.9	1.1e-13	115	159	1	47
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 r++WT+ Ed +l a+k++G++ W+ I + ++ gR+++ +k+rw+++ Mapoly0132s0029.1.p 115 RDPWTEVEDMRLFLAHKRFGSK-WSQICSILP-GRSENGVKNRWNTH 159 799*****************.*****.**********97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50090	5.157	21	56	IPR017877	Myb-like domain
SMART	SM00717	8.4	25	59	IPR001005	SANT/Myb domain
SuperFamily	SSF46689	1.17E-5	28	61	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	3.4E-10	28	74	IPR009057	Homeodomain-like
PROSITE profile	PS51294	26.423	58	113	IPR017930	Myb domain
SuperFamily	SSF46689	4.23E-29	61	156	IPR009057	Homeodomain-like
SMART	SM00717	4.7E-15	62	111	IPR001005	SANT/Myb domain
Pfam	PF00249	7.4E-17	63	109	IPR001005	SANT/Myb domain
CDD	cd00167	7.36E-12	66	107	No hit	No description
Gene3D	G3DSA:1.10.10.60	8.0E-25	75	115	IPR009057	Homeodomain-like
SMART	SM00717	2.2E-12	114	162	IPR001005	SANT/Myb domain
PROSITE profile	PS51294	15.857	114	164	IPR017930	Myb domain
Pfam	PF00249	2.4E-12	115	159	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	2.2E-20	116	163	IPR009057	Homeodomain-like
CDD	cd00167	1.09E-7	117	160	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 202 aa Download sequence Send to blast
MEVEVSHLES SKKQHVTGAS SMRNRVERWT PEEDELLQEA VVQYKAKNWR LRWQKVLNPA 60 IVKGYWTKEE DQKMLELVGM LGTKRWAAVA RCLPGRIGKQ CRERWYNQLD PSIKRDPWTE 120 VEDMRLFLAH KRFGSKWSQI CSILPGRSEN GVKNRWNTHI KKKAFILEEY CRMWNNQQNS 180 SQNEELLGNE AAIKDLLSIS E*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1h88_C	3e-48	28	164	8	159	MYB PROTO-ONCOGENE PROTEIN
1h89_C	3e-48	28	164	8	159	MYB PROTO-ONCOGENE PROTEIN
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002505942.1	8e-55	predicted protein, partial
TrEMBL	A0A2R6W7X4	1e-146	A0A2R6W7X4_MARPO; Uncharacterized protein
STRING	XP_002505942.1	3e-54	(Micromonas sp. RCC299)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Representative plant	OGRP5	17	1784

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G32730.2	9e-52	Homeodomain-like protein

Link Out ? help Back to Top
Phytozome	Mapoly0132s0029.1.p