PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Mapoly0132s0031.1.p
Organism
Marchantia polymorpha
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Marchantiophyta; Marchantiopsida; Marchantiidae; Marchantiales; Marchantiaceae; Marchantia
Family MYB
Protein Properties Length: 221aa    MW: 25862.8 Da    PI: 9.6421
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Mapoly0132s0031.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding54.33.2e-173276348
                         SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
      Myb_DNA-binding  3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                         rWT+eEdell +av q+  ++W+++a+ ++ +Rt+ qc  rwqk+l
  Mapoly0132s0031.1.p 32 RWTPEEDELLQEAVVQYKAKNWRLVAKAVP-NRTEIQCLQRWQKVL 76
                         9*****************************.************986 PP
2Myb_DNA-binding55.51.3e-1782127147
                          TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
      Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                          +g WT+eEd++ +++v +lG+++W+++ar ++ gR +kqc++rw++ 
  Mapoly0132s0031.1.p  82 KGYWTKEEDQKMLELVGMLGTKRWAAVARSLP-GRIGKQCRERWYNQ 127
                          789*****************************.************96 PP
3Myb_DNA-binding42.71.3e-13134178147
                          TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
      Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                          r++WT+ Ed +l  a+k++G++ W+ I + ++ gR+++ +k+rw+++
  Mapoly0132s0031.1.p 134 RDPWTEVEDMRLFLAHKRFGSK-WSQICSILP-GRSENGVKNRWNTH 178
                          799*******************.*********.************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129418.5022576IPR017930Myb domain
SMARTSM007173.1E-152978IPR001005SANT/Myb domain
SuperFamilySSF466894.76E-163182IPR009057Homeodomain-like
PfamPF002497.1E-153276IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.7E-223292IPR009057Homeodomain-like
CDDcd001678.52E-123276No hitNo description
PROSITE profilePS5129427.20477132IPR017930Myb domain
SuperFamilySSF466896.57E-2980175IPR009057Homeodomain-like
SMARTSM007171.3E-1481130IPR001005SANT/Myb domain
PfamPF002499.6E-1782128IPR001005SANT/Myb domain
CDDcd001671.42E-1185126No hitNo description
Gene3DG3DSA:1.10.10.601.5E-2493134IPR009057Homeodomain-like
PROSITE profilePS5129415.857133183IPR017930Myb domain
SMARTSM007172.2E-12133181IPR001005SANT/Myb domain
PfamPF002492.8E-12134178IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.5E-20135182IPR009057Homeodomain-like
CDDcd001671.03E-7136179No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 221 aa     Download sequence    Send to blast
MEECNMEVEV SHLESKKQHV TGASSMRKRV ERWTPEEDEL LQEAVVQYKA KNWRLVAKAV  60
PNRTEIQCLQ RWQKVLNPAI VKGYWTKEED QKMLELVGML GTKRWAAVAR SLPGRIGKQC  120
RERWYNQLDP SIKRDPWTEV EDMRLFLAHK RFGSKWSQIC SILPGRSENG VKNRWNTHIK  180
KKAFILEEYC RMLNNQQNPS QNEELLGNEA AKKDLLSILE *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h88_C1e-59321838159MYB PROTO-ONCOGENE PROTEIN
1h89_C1e-59321838159MYB PROTO-ONCOGENE PROTEIN
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that binds 5'-AACGG-3' motifs in gene promoters (By similarity). Transcription repressor that regulates organ growth. Binds to the promoters of G2/M-specific genes and to E2F target genes to prevent their expression in post-mitotic cells and to restrict the time window of their expression in proliferating cells (PubMed:26069325). {ECO:0000250|UniProtKB:Q94FL9, ECO:0000269|PubMed:26069325}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Slightly induced by ethylene, auxin (IAA), jasmonic acid (JA) and salicylic acid (SA). {ECO:0000269|PubMed:16463103}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002505942.11e-64predicted protein, partial
SwissprotQ8H1P93e-62MB3R3_ARATH; Transcription factor MYB3R-3
TrEMBLA0A2R6W7Y01e-161A0A2R6W7Y0_MARPO; Uncharacterized protein
STRINGXP_002505942.15e-64(Micromonas sp. RCC299)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP5171784
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G09370.11e-64myb domain protein 3r-3
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Kobayashi K, et al.
    Transcriptional repression by MYB3R proteins regulates plant organ growth.
    EMBO J., 2015. 34(15): p. 1992-2007
    [PMID:26069325]
  3. Chen P, et al.
    Arabidopsis R1R2R3-Myb proteins are essential for inhibiting cell division in response to DNA damage.
    Nat Commun, 2017. 8(1): p. 635
    [PMID:28935922]