PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Mapoly0152s0027.1.p
Organism
Marchantia polymorpha
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Marchantiophyta; Marchantiopsida; Marchantiidae; Marchantiales; Marchantiaceae; Marchantia
Family LBD
Protein Properties Length: 115aa    MW: 13057.2 Da    PI: 7.2879
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Mapoly0152s0027.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF26076.64.5e-2428914100
               DUF260  14 kdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavg.vilklqqqleqlkaelallkee 100
                          ++C++apy+pa+qp +f +vhk++Gas+v+k+l++++e+ r da++slv+  ear++d  yG++g v+++++q++e+l++++a l ++
  Mapoly0152s0027.1.p   2 AECIFAPYIPADQPLRFVYVHKMYGASTVTKILHDMQESSRADAAASLVFAVEARVKDSTYGCCGaVVWRMNQRIEELRKQIADLDKQ 89 
                          58*************************************************************984689************9988766 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089113.612190IPR004883Lateral organ boundaries, LOB
PfamPF031951.8E-22285IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 115 aa     Download sequence    Send to blast
MAECIFAPYI PADQPLRFVY VHKMYGASTV TKILHDMQES SRADAAASLV FAVEARVKDS  60
TYGCCGAVVW RMNQRIEELR KQIADLDKQV YWLELKMRET LTQWPVVPQS LICS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A9e-2218323104LOB family transfactor Ramosa2.1
5ly0_B9e-2218323104LOB family transfactor Ramosa2.1
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A2R6W4Y94e-80A0A2R6W4Y9_MARPO; Uncharacterized protein
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G30130.16e-27LBD family protein