PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Mapoly0153s0039.1.p
Organism
Marchantia polymorpha
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Marchantiophyta; Marchantiopsida; Marchantiidae; Marchantiales; Marchantiaceae; Marchantia
Family LBD
Protein Properties Length: 140aa    MW: 15870.2 Da    PI: 5.3046
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Mapoly0153s0039.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF26091.11.3e-2830127198
               DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleql 90 
                          +Ca Ck+  + C + Cv+a++fp++++++f  v+ ++G ++v ++l+++++  re+a+++lv eAear +dPv+G +g+i +l++q+++l
  Mapoly0153s0039.1.p  30 RCARCKYFDKMCDEFCVFAQIFPEAKRQSFLLVNDVYGEEQVENILHDVEPRLRETAAATLVLEAEARKKDPVHGITGIIEELNRQIDTL 119
                          6***************************************************************************************** PP

               DUF260  91 kaelallk 98 
                          k++l +++
  Mapoly0153s0039.1.p 120 KKDLTKAQ 127
                          ***99887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089119.7529130IPR004883Lateral organ boundaries, LOB
PfamPF031951.6E-2730127IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 140 aa     Download sequence    Send to blast
MNRLEPNQVM GSNHDDVRAE KNIETFALGR CARCKYFDKM CDEFCVFAQI FPEAKRQSFL  60
LVNDVYGEEQ VENILHDVEP RLRETAAATL VLEAEARKKD PVHGITGIIE ELNRQIDTLK  120
KDLTKAQYTL LFGKPNAAL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A2e-223113112112LOB family transfactor Ramosa2.1
5ly0_B2e-223113112112LOB family transfactor Ramosa2.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A2R6W4U45e-99A0A2R6W4U4_MARPO; Uncharacterized protein
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G27650.11e-15LOB domain-containing protein 25