PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Mapoly0159s0028.1.p
Organism
Marchantia polymorpha
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Marchantiophyta; Marchantiopsida; Marchantiidae; Marchantiales; Marchantiaceae; Marchantia
Family Trihelix
Protein Properties Length: 661aa    MW: 73576.2 Da    PI: 5.4891
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Mapoly0159s0028.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix46.31.1e-14143231186
             trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm....rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 
                          +W++  +  L++a++e+ ++l rg lk+ +Weevs+++     +++  ++   Ck k++ l++ryk +k+ +++  s + s++p++ ++e
  Mapoly0159s0028.1.p 143 EWSDGAISSLLDAYEEKYTKLDRGHLKGRDWEEVSSVVngrcGAQKTAKGVMNCKYKMDTLKRRYKVEKDKKRSSGSMK-SRWPWYARME 231
                          5*************************************98888888899999*********************975555.59*******8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138372.5E-17141233No hitNo description
SuperFamilySSF534743.13E-74326638IPR029058Alpha/Beta hydrolase fold
Gene3DG3DSA:3.40.50.18201.1E-27342637IPR029058Alpha/Beta hydrolase fold
PfamPF005614.3E-10386638IPR000073Alpha/beta hydrolase fold-1
Sequence ? help Back to Top
Protein Sequence    Length: 661 aa     Download sequence    Send to blast
MMASTPDESC SRGLEMEAMA SEDDVVHRAA GLVMDAMASE DDVGICAQPE FVKNHDRIRL  60
DLGSARERGD AEMASTPNES CSQGLAVDGM ASEDDVHSQG LGMDPMGSDD DVGLGPEPHV  120
LAEQKHKKPK LDPEGGKVKD REEWSDGAIS SLLDAYEEKY TKLDRGHLKG RDWEEVSSVV  180
NGRCGAQKTA KGVMNCKYKM DTLKRRYKVE KDKKRSSGSM KSRWPWYARM EQLVEQGGDK  240
MVAAEGSSAE DEDHLHPGTS DLPSAEAKPK VSQLLGFPSP AVKRPYRKRA IERGISRALS  300
RSVRYEHTVA GIKLDPRTMT QGERESYELF DLGDFPLNEG ATLRGAKLAY KTWGSLNEDS  360
SNAILYPTWY SGRHWENDWL IGPTMTLDPS KYFIIVPNMF GNGLSTSPSN CSPPYNQARF  420
PKVTVEDNVR AQYKLVVEKF GIRRLKLVLG WAMGAGQTFQ WAVSYPDMME RILPFCGSAR  480
TSPHSVVMLE GVKAALTADI GFQDGWYKEI PSKGLRAAAR VYAGWGFSQA FYWNELWRDM  540
GYTSLEDCLI GYWEGFFLDR RDPNNLLTML WTWANGNVGL TPGFDGNLEK ALASIKAKAI  600
VISAERDLYF PPQDEAYEVK FIPNAEFRVM PGLWGHFAGA GINPIDTKYI DQVIRELLAT  660
*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d6o_A4e-733146572343Homoserine O-acetyltransferase
5d6o_B4e-733146572343Homoserine O-acetyltransferase
5d6o_C4e-733146572343Homoserine O-acetyltransferase
5d6o_D4e-733146572343Homoserine O-acetyltransferase
5d7b_A4e-733146572343Homoserine O-acetyltransferase
5d7b_B4e-733146572343Homoserine O-acetyltransferase
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024383860.10.0uncharacterized protein LOC112286322
TrEMBLA0A2R6W4320.0A0A2R6W432_MARPO; Uncharacterized protein
STRINGPP1S89_235V6.10.0(Physcomitrella patens)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP1685022
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G10030.12e-31Trihelix family protein