PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Mapoly0162s0001.1.p
Organism
Marchantia polymorpha
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Marchantiophyta; Marchantiopsida; Marchantiidae; Marchantiales; Marchantiaceae; Marchantia
Family WRKY
Protein Properties Length: 622aa    MW: 66803.7 Da    PI: 6.4036
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Mapoly0162s0001.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY97.21.1e-30348406259
                          --SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
                 WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                          +Dg++WrKYGqK+ kg+++pr+YYrCt + gCpv+k+v+r+a+d++++++tYeg+Hnh+
  Mapoly0162s0001.1.p 348 NDGCQWRKYGQKMAKGNPCPRAYYRCTVSqGCPVRKQVQRCADDTSILITTYEGTHNHS 406
                          8**************************998****************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.808.7E-34332408IPR003657WRKY domain
SuperFamilySSF1182902.22E-28340408IPR003657WRKY domain
PROSITE profilePS5081130.148342408IPR003657WRKY domain
SMARTSM007746.6E-39347407IPR003657WRKY domain
PfamPF031064.2E-27348405IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 622 aa     Download sequence    Send to blast
MRTDIGKPPA ATSGSSSGRM DRVQRIDLSV ALSDDANEDV QEMATSDQTP SSPVTTQYLQ  60
LSSDSGSKPK FVESAPLSAR LMEDDSNGLR LATNNCHERS TVEDGSPPPS PERSTTPAEP  120
EIREQLRRAQ LEMARMTEEN EEIKKMFKTL SMEYHRLHVN MFQMLNAQSG PAVTQASGLS  180
FQTEEEYKRH TEHDSRTAAN LFPISSSQSQ GSASRNAISA FGDGHISDEK EDSRDAEAVK  240
VLPGVVGKRS RESPETQTPD RSEMTRQRDG AAPRAASSPR EAAMEESGGS EHVTESPPRE  300
RERDESSSAP STGWPHNKRM KTGPAVHDPS GRNARVSVRA RSDATTLNDG CQWRKYGQKM  360
AKGNPCPRAY YRCTVSQGCP VRKQVQRCAD DTSILITTYE GTHNHSLPPA ATAMASTTSA  420
AANMLLSGST SSSEMVEAST HAYNLASRTA PIISASTPFP TITLDLTNNP AAAQQMRMAG  480
ANAFQMPYSF TSASSGLQMH PPSMINPVQS GGYYAQSAAE QTTGAFQVYT NPAAGWLQHQ  540
MQQQQQQQQA SPTRSPQFLA ETVSAATAAI TSDPNFTAAL AAAITSIISS QTNSTMMGAS  600
NANITEALRV AGLPISSARK D*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A1e-22334410176WRKY transcription factor 1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A176VNI30.0A0A176VNI3_MARPO; Uncharacterized protein
TrEMBLA0A2R6W3N60.0A0A2R6W3N6_MARPO; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP1417875
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G04450.13e-54WRKY family protein