PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Mapoly0173s0030.1.p

Organism

Marchantia polymorpha

Taxonomic ID

3197

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Marchantiophyta; Marchantiopsida; Marchantiidae; Marchantiales; Marchantiaceae; Marchantia

Family

LBD

Protein Properties

Length: 247aa MW: 28277 Da PI: 8.1821

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Mapoly0173s0030.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	105.5	4.4e-33	8	106	1	100
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleql 90 aCaaCk++rrkCa dC lap fp +q+++fan+h+lFG++++l+l+++ +++ +d+m s+++e++ar rdPv+G +g++++lq++ e+l Mapoly0173s0030.1.p 8 ACAACKFQRRKCAVDCLLAPWFPPDQHRRFANAHRLFGVAKILRLIRE-NRSSVQDLMMSVCFESDARERDPVSGEYGILRRLQREAERL 96 7*********************************************.888899******************************* PP DUF260 91 kaelallkee 100 ++++ +l e+ Mapoly0173s0030.1.p 97 EENITALSEK 106 99988766 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	19.948	7	107	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	5.2E-30	8	103	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 247 aa Download sequence Send to blast
MGSPPNAACA ACKFQRRKCA VDCLLAPWFP PDQHRRFANA HRLFGVAKIL RLIRENRSSV 60 QDLMMSVCFE SDARERDPVS GEYGILRRLQ REAERLEENI TALSEKLRIL LVEDAAANHV 120 NNAPHSHSAY NAVPPEYYAH ARPSQVAETT PALQDNCGYH MQQQKLQHQQ PHQQQQHLHY 180 MQMPQQQHQQ QQPHQKQQQL HYMQMAQQQM LSLEYFVNFN AVGGGGFPPV QATHASTSHP 240 LMHFYL*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	3e-22	6	108	9	113	LOB family transfactor Ramosa2.1
5ly0_B	3e-22	6	108	9	113	LOB family transfactor Ramosa2.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
TrEMBL	A0A2R6W2N7	0.0	A0A2R6W2N7_MARPO; Uncharacterized protein

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Representative plant	OGRP5524	10	21

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G13850.1	5e-28	LOB domain-containing protein 22

Link Out ? help Back to Top
Phytozome	Mapoly0173s0030.1.p