PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Mapoly0174s0004.1.p
Organism
Marchantia polymorpha
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Marchantiophyta; Marchantiopsida; Marchantiidae; Marchantiales; Marchantiaceae; Marchantia
Family bHLH
Protein Properties Length: 829aa    MW: 89587.6 Da    PI: 6.6468
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Mapoly0174s0004.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH53.15.7e-17372421255
                          HHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                  HLH   2 rrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                          r +h++ E+rRR++iN++f+ Lrel+P++    ++K +Ka+ L +++eYI+ Lq
  Mapoly0174s0004.1.p 372 RSKHSATEQRRRSKINDRFQMLRELVPHS----DQKRDKASFLLEVIEYIQVLQ 421
                          889*************************9....9*****************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474592.36E-17367429IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088816.634370420IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.3E-21370433IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.7E-14372421IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000833.12E-15372425No hitNo description
SMARTSM003532.4E-12376426IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006351Biological Processtranscription, DNA-templated
GO:0009742Biological Processbrassinosteroid mediated signaling pathway
GO:1902448Biological Processpositive regulation of shade avoidance
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 829 aa     Download sequence    Send to blast
MAFSSSGTPM SMKEHSLGVS IGPGASVGVS SAGYTTFAPA SHDFQGPVEF SQQQREYLAQ  60
RSMMGQAAEQ QHSQGRGQGG GHSQGQHINM NEGAKPSTVS THDFLSLYAD NSNQYAEHHD  120
NMRGLSSALT TKDFLQPLET RGNHAAFREG QPSRGEKHPR QPEGLPHGST PAPPAVVERL  180
LSTGMNVYNG GHGVPNYGRV AKGAIDLPAN TMVRMVGEGN VEMRGRGGFN PSAGSMVTRE  240
DHDARNDLPK DQDAAPRGDN LAYWSNVRMK FGMLPPELNY HSQPNQPTSH VVMENVQQPP  300
VPNMPKPWPQ GVQGVIDMTK RPTRVLSEDD EDDEEEYGDR PRETRSKEPL SKADPAQKVD  360
GKAPENRGGT PRSKHSATEQ RRRSKINDRF QMLRELVPHS DQKRDKASFL LEVIEYIQVL  420
QDKVRKFETA EQGRHQDRLK NMVWDLCKRG GSGPGDTSIE ATCMDALAYA KEFVPSSAGL  480
PIDVKQVTEA AEVVRQRAVA NADENGSTEL SHNPQHTHKS GHHGASSSHD EKEGAAVLGK  540
SPLSSQQHQG QTTFSSRNLQ HASQSKQLSA ASDAQANVAG EGQVQNSSTI APATGAYDQH  600
DKANEVEPSQ QTRTQASTQQ SQGEGDTSDQ QHPDTRHRHG TTTAEDTGNG HAASFTDDQS  660
NTKPHMKSDR QHGYGSSPRS THNSQATDTS QANWQGQQHG SSAENSQQKE ESRGATTSAQ  720
GQDPLTIQGG VINVSSVYSQ GLLDTLTRAL QSSGLDLSQA NISVQIDLGK SISSAALPPS  780
TPKVSGQPAE TSGQRHQQQS ESHTRQQGGS STDPEHPPLK RPKLEMEL*
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00498DAPTransfer from AT5G08130Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024392458.12e-94uncharacterized protein LOC112290452
TrEMBLA0A2R6W2K40.0A0A2R6W2K4_MARPO; Uncharacterized protein
STRINGPP1S37_126V6.18e-94(Physcomitrella patens)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP13601747
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G08130.18e-30bHLH family protein