PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Mapoly0176s0008.1.p

Organism

Marchantia polymorpha

Taxonomic ID

3197

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Marchantiophyta; Marchantiopsida; Marchantiidae; Marchantiales; Marchantiaceae; Marchantia

Family

LBD

Protein Properties

Length: 167aa MW: 18098.9 Da PI: 7.5043

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Mapoly0176s0008.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	143.6	5.9e-45	8	107	1	100
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleql 90 +CaaCk+lrr+Ca+dCv+apyfp ++p+kfanvhk+FGasnv k+l++lp + r da+ss+vyeA+ar+rdPvyG+vg i++lqqq++ql Mapoly0176s0008.1.p 8 PCAACKLLRRRCARDCVFAPYFPPDEPQKFANVHKVFGASNVNKMLQDLPIHSRGDAVSSMVYEADARVRDPVYGCVGAISSLQQQVAQL 97 7*************************************************************************************** PP DUF260 91 kaelallkee 100 +++la++++e Mapoly0176s0008.1.p 98 QTQLAVANAE 107 ***99876 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	26.077	7	108	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	1.6E-44	8	105	IPR004883	Lateral organ boundaries, LOB

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009965	Biological Process	leaf morphogenesis

Sequence ? help Back to Top
Protein Sequence Length: 167 aa Download sequence Send to blast
MPGSGMSPCA ACKLLRRRCA RDCVFAPYFP PDEPQKFANV HKVFGASNVN KMLQDLPIHS 60 RGDAVSSMVY EADARVRDPV YGCVGAISSL QQQVAQLQTQ LAVANAEIVC IRMHQAALVS 120 NAHHMKDGMV TNNSPPLTPP SPELNHHMKP MIGGLEPLEL TEPLWS*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	6e-51	2	109	6	112	LOB family transfactor Ramosa2.1
5ly0_B	6e-51	2	109	6	112	LOB family transfactor Ramosa2.1
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024384061.1	3e-84	LOB domain-containing protein 4-like
Refseq	XP_024384062.1	3e-84	LOB domain-containing protein 4-like
Refseq	XP_024384063.1	3e-84	LOB domain-containing protein 4-like
Refseq	XP_024384064.1	3e-84	LOB domain-containing protein 4-like
Swissprot	Q8LBW3	2e-62	LBD12_ARATH; LOB domain-containing protein 12
TrEMBL	A0A176W3Y2	1e-120	A0A176W3Y2_MARPO; Uncharacterized protein
TrEMBL	A0A2R6W2G5	1e-120	A0A2R6W2G5_MARPO; Uncharacterized protein
STRING	PP1S238_53V6.1	1e-83	(Physcomitrella patens)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Representative plant	OGRP60	16	318

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G31320.1	3e-41	LOB domain-containing protein 4

Link Out ? help Back to Top
Phytozome	Mapoly0176s0008.1.p

Publications ? help Back to Top
Penfield S, et al. Reserve mobilization in the Arabidopsis endosperm fuels hypocotyl elongation in the dark, is independent of abscisic acid, and requires PHOSPHOENOLPYRUVATE CARBOXYKINASE1. Plant Cell, 2004. 16(10): p. 2705-18 [PMID:15367715]