PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Mapoly0183s0010.1.p
Organism
Marchantia polymorpha
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Marchantiophyta; Marchantiopsida; Marchantiidae; Marchantiales; Marchantiaceae; Marchantia
Family B3
Protein Properties Length: 183aa    MW: 21409 Da    PI: 10.0448
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Mapoly0183s0010.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B331.14.1e-1055135895
                          -HHHHTT-EE--HHH.HTT..---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEE CS
                   B3   8 sdvlksgrlvlpkkfaeeh..ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvk 95 
                           +v+   ++ l  +f++ +  g++  +++   ++d++  sW vk+ +++++   ++++GW +Fvka g ++g  + F+++  s ++l+v+
  Mapoly0183s0010.1.p  55 TSVHHCFLMGLDPTFCRLFlpGED--TNV-TLIYDKDETSWPVKF-FSRRR---LFSGGWIKFVKAYGFEVGQLLNFEVE--SPKTLRVR 135
                          556666677888999977764333..333.34488**********.33333...79**********************54..56655665 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.102.7E-1246138IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019364.9E-1446138IPR015300DNA-binding pseudobarrel domain
CDDcd100171.31E-1246138No hitNo description
PROSITE profilePS508639.54548140IPR003340B3 DNA binding domain
SMARTSM010193.8E-649140IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 183 aa     Download sequence    Send to blast
MDSENFKMNV RRKTRAQLTK ESVFLKRDAW NHLEKIHTFP CLIKGPNIFR VMDKTSVHHC  60
FLMGLDPTFC RLFLPGEDTN VTLIYDKDET SWPVKFFSRR RLFSGGWIKF VKAYGFEVGQ  120
LLNFEVESPK TLRVRSYDNL GPNCVRSREQ IEAKIRRPKP DPIVMKVVEY PEGPRLCIIP  180
RD*
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A2R6W1T81e-133A0A2R6W1T8_MARPO; Uncharacterized protein
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G42700.11e-08B3 family protein