PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Mapoly0198s0008.2.p

Organism

Marchantia polymorpha

Taxonomic ID

3197

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Marchantiophyta; Marchantiopsida; Marchantiidae; Marchantiales; Marchantiaceae; Marchantia

Family

E2F/DP

Protein Properties

Length: 1044aa MW: 116481 Da PI: 9.0346

Description

E2F/DP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Mapoly0198s0008.2.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	E2F_TDP	34.4	3.7e-11	361	428	2	71
E2F_TDP 2 keksLrlltqkflklleksee...givtlnevakeLvsedvknkrRRiYDilNVLealnliekkekneirwkg 71 ke+sL+ l++++l+ + +++e vtl+ a++L +rRRi i+NVLe +n+i+ + k+++ w g Mapoly0198s0008.2.p 361 KEHSLTDLCERLLMACVSKQEygqAYVTLRLLANTL---GA--RRRRILEIINVLEIINVIQNQGKEKYLWLG 428 899******9999988776633468999999999...77..9*************************87 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.10	1.4E-11	358	429	IPR011991	Winged helix-turn-helix DNA-binding domain
SMART	SM01372	1.0E-7	360	428	IPR003316	E2F/DP family, winged-helix DNA-binding domain
SuperFamily	SSF46785	3.81E-6	360	427	IPR011991	Winged helix-turn-helix DNA-binding domain
Pfam	PF02319	4.2E-9	361	428	IPR003316	E2F/DP family, winged-helix DNA-binding domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005667	Cellular Component	transcription factor complex
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 1044 aa Download sequence Send to blast
MEPSNQGASE PCINERQPKG KENMIGKAIF KGTELLCPVS TSSPLAIAEQ PELRAYKLGK 60 QKCSYNQVEL VIKDVGGGKI NELKVSEAIE TCVGSEVDEL LRESCLKFNV RFINNNRMHL 120 YIYVVYATPH GTSRTDNQSV NYQWIPVTRA KCRKSCKGPV IRGLQRFGRM PRRNASGLDG 180 EDSWKEPRHL YIAIDEASTH VCPRHETSKF RLLVAAYDDK NQLLGSTVSS SIRVLANNDA 240 PLGAASFKLH CHIKGGWNSS IAESPIRNAG HRIHDKAVIS SRSPLQDIIQ NSSPPKSSKS 300 TTTDETAKQG ELTSSPLLDI DLNKDIYDFD QEVDENNMTN IQTSHKATTS DQTGAVYKDE 360 KEHSLTDLCE RLLMACVSKQ EYGQAYVTLR LLANTLGARR RRILEIINVL EIINVIQNQG 420 KEKYLWLGST QIARALLRLK DDGEAKESNR TLTRPGRRPK ARNGDINHRE IEELKSEINN 480 PMRSLSKKFV QLFLIHEKSP HISWERMLEY IIDGQGDDPE TIRAKTRRLG EVARIFNAIH 540 LIRRVASEKT QPGLVYEWLG SQGVAEHLVT LADLAESSGT KKVDGRRTRN YQPRGSSRSP 600 MKEERKGSGS RQSTVCDGSI SNLSQIQQTK MQSLHQISLS LPADRFKSVE NSARGQSSAS 660 KEPDRDENAH VCRKFSVPRK KRAQRPFESL SINEAAGAET PVPRSNMFRT SCTDSTRNSA 720 FKLCQSSLSG HIRGEIASQC DLSLSHQQSK FSNWKLQVEK LSTWGGRPVD PEPQCSSVDQ 780 EIHQNSYKVI QPVNVSASLR KDCPETNVHE VSASSEHTAE GETSPDKIDA GSTTTDALDT 840 FNTKYSGGKS RNGVFRGERS FRITALRGTT WRKWQNRSSS TTSKEVHRNI EDIPQLPMNP 900 LIELRALSLM PQSDTVASSS VSRPNAQQVP YKKRKFNYRT EDEGSSTSGE TPQSSSSHEG 960 DGSSGQLQAH SPCSLDHGKR SLRGREISAP LYEEIGLRVC EQPQRPRSEE AATQREPAFN 1020 PLGDLLKYMT QEQLIELQAQ NPL*

Sequence ? help Back to Top

Protein Sequence Length: 1044 aa Download sequence Send to blast

MEPSNQGASE PCINERQPKG KENMIGKAIF KGTELLCPVS TSSPLAIAEQ PELRAYKLGK  60
QKCSYNQVEL VIKDVGGGKI NELKVSEAIE TCVGSEVDEL LRESCLKFNV RFINNNRMHL  120
YIYVVYATPH GTSRTDNQSV NYQWIPVTRA KCRKSCKGPV IRGLQRFGRM PRRNASGLDG  180
EDSWKEPRHL YIAIDEASTH VCPRHETSKF RLLVAAYDDK NQLLGSTVSS SIRVLANNDA  240
PLGAASFKLH CHIKGGWNSS IAESPIRNAG HRIHDKAVIS SRSPLQDIIQ NSSPPKSSKS  300
TTTDETAKQG ELTSSPLLDI DLNKDIYDFD QEVDENNMTN IQTSHKATTS DQTGAVYKDE  360
KEHSLTDLCE RLLMACVSKQ EYGQAYVTLR LLANTLGARR RRILEIINVL EIINVIQNQG  420
KEKYLWLGST QIARALLRLK DDGEAKESNR TLTRPGRRPK ARNGDINHRE IEELKSEINN  480
PMRSLSKKFV QLFLIHEKSP HISWERMLEY IIDGQGDDPE TIRAKTRRLG EVARIFNAIH  540
LIRRVASEKT QPGLVYEWLG SQGVAEHLVT LADLAESSGT KKVDGRRTRN YQPRGSSRSP  600
MKEERKGSGS RQSTVCDGSI SNLSQIQQTK MQSLHQISLS LPADRFKSVE NSARGQSSAS  660
KEPDRDENAH VCRKFSVPRK KRAQRPFESL SINEAAGAET PVPRSNMFRT SCTDSTRNSA  720
FKLCQSSLSG HIRGEIASQC DLSLSHQQSK FSNWKLQVEK LSTWGGRPVD PEPQCSSVDQ  780
EIHQNSYKVI QPVNVSASLR KDCPETNVHE VSASSEHTAE GETSPDKIDA GSTTTDALDT  840
FNTKYSGGKS RNGVFRGERS FRITALRGTT WRKWQNRSSS TTSKEVHRNI EDIPQLPMNP  900
LIELRALSLM PQSDTVASSS VSRPNAQQVP YKKRKFNYRT EDEGSSTSGE TPQSSSSHEG  960
DGSSGQLQAH SPCSLDHGKR SLRGREISAP LYEEIGLRVC EQPQRPRSEE AATQREPAFN  1020
PLGDLLKYMT QEQLIELQAQ NPL*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
TrEMBL	A0A2R6W0Q4	0.0	A0A2R6W0Q4_MARPO; Uncharacterized protein

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G01330.1	1e-06	DP-E2F-like protein 3

Link Out ? help Back to Top
Phytozome	Mapoly0198s0008.2.p