PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Mapoly0216s0010.1.p

Organism

Marchantia polymorpha

Taxonomic ID

3197

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Marchantiophyta; Marchantiopsida; Marchantiidae; Marchantiales; Marchantiaceae; Marchantia

Family

NF-YB

Protein Properties

Length: 194aa MW: 21210.6 Da PI: 6.1195

Description

NF-YB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Mapoly0216s0010.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NF-YB	188.4	4.9e-59	31	127	1	97
NF-YB 1 vreqdrflPianvsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvylkky 90 vreqdrflPian+srimkk+lP naki+kdaketvqecvsefisf+tseasdkcqrekrktingddllwa++tlGfedyveplkvyl+ky Mapoly0216s0010.1.p 31 VREQDRFLPIANISRIMKKALPVNAKIAKDAKETVQECVSEFISFITSEASDKCQREKRKTINGDDLLWAMSTLGFEDYVEPLKVYLHKY 120 69************************************************************************************** PP NF-YB 91 relegek 97 re+eg+k Mapoly0216s0010.1.p 121 REMEGDK 127 ***97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.20.10	5.3E-58	27	147	IPR009072	Histone-fold
SuperFamily	SSF47113	2.17E-43	34	148	IPR009072	Histone-fold
Pfam	PF00808	6.3E-28	37	101	IPR003958	Transcription factor CBF/NF-Y/archaeal histone domain
PRINTS	PR00615	2.1E-22	65	83	No hit	No description
PROSITE pattern	PS00685	0	68	84	IPR003956	Transcription factor, NFYB/HAP3, conserved site
PRINTS	PR00615	2.1E-22	84	102	No hit	No description
PRINTS	PR00615	2.1E-22	103	121	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0043565	Molecular Function	sequence-specific DNA binding
GO:0046982	Molecular Function	protein heterodimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 194 aa Download sequence Send to blast
MAGTSSPGSQ DNSHSDDFGN AGGGDRDNSN VREQDRFLPI ANISRIMKKA LPVNAKIAKD 60 AKETVQECVS EFISFITSEA SDKCQREKRK TINGDDLLWA MSTLGFEDYV EPLKVYLHKY 120 REMEGDKGSS INKPGESNSG KKEGTSHPAV QQMSAGVQAY NMGYNIQNQM MSAPPNYQLQ 180 MQQMLAAPGG QQH*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
4g91_B	1e-48	31	122	1	92	Transcription factor HapC (Eurofung)
4g92_B	1e-48	31	122	1	92	Transcription factor HapC (Eurofung)
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Functional Description ? help Back to Top
Source	Description
UniProt	Component of the NF-Y/HAP transcription factor complex. The NF-Y complex stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024369282.1	2e-89	nuclear transcription factor Y subunit B-1-like isoform X1
Swissprot	O23310	1e-65	NFYB3_ARATH; Nuclear transcription factor Y subunit B-3
TrEMBL	A0A2R6VZY9	1e-143	A0A2R6VZY9_MARPO; Uncharacterized protein
STRING	PP1S25_89V6.1	4e-88	(Physcomitrella patens)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Representative plant	OGRP168	17	170

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G14540.1	5e-68	nuclear factor Y, subunit B3

Link Out ? help Back to Top
Phytozome	Mapoly0216s0010.1.p

Publications ? help Back to Top
Han X, et al. Overexpression of the poplar NF-YB7 transcription factor confers drought tolerance and improves water-use efficiency in Arabidopsis. J. Exp. Bot., 2013. 64(14): p. 4589-601 [PMID:24006421] Hwang YH, et al. Functional conservation of rice OsNF-YB/YC and Arabidopsis AtNF-YB/YC proteins in the regulation of flowering time. Plant Cell Rep., 2016. 35(4): p. 857-65 [PMID:26754793] Hossain MA, et al. Identification of Novel Components of the Unfolded Protein Response in Arabidopsis. Front Plant Sci, 2016. 7: p. 650 [PMID:27242851] Zhao H, et al. The Arabidopsis thaliana Nuclear Factor Y Transcription Factors. Front Plant Sci, 2016. 7: p. 2045 [PMID:28119722]