PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Mapoly0223s0002.1.p
Organism
Marchantia polymorpha
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Marchantiophyta; Marchantiopsida; Marchantiidae; Marchantiales; Marchantiaceae; Marchantia
Family ERF
Protein Properties Length: 258aa    MW: 26964.8 Da    PI: 5.7969
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Mapoly0223s0002.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP249.11.4e-15179230255
                  AP2   2 gykGVrwdkkrgrWvAeIrdpseng..krkrfslgkfgtaeeAakaaiaarkkleg 55 
                          +++GVr+    g+W A+I++    +  k+ +++lg+f+t+eeAa+a++ a+  l+g
  Mapoly0223s0002.1.p 179 KFRGVRQTA-LGKWSARICHS---KekKKMQVWLGTFDTPEEAARAYDIAAIDLHG 230
                          89****887.9*********5...34346**********************99997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.101.3E-23179239IPR001471AP2/ERF domain
PfamPF008471.0E-10179230IPR001471AP2/ERF domain
SMARTSM003805.2E-26179244IPR001471AP2/ERF domain
CDDcd000184.25E-23179240No hitNo description
PROSITE profilePS5103219.757179238IPR001471AP2/ERF domain
SuperFamilySSF541713.92E-18179239IPR016177DNA-binding domain
PRINTSPR003671.7E-7180191IPR001471AP2/ERF domain
PRINTSPR003671.7E-7204220IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 258 aa     Download sequence    Send to blast
MEDVGSAAPE AHLKQAQQSC SSTVSGTSAA SANADSVQVV GREYGPLEQL WPTIEDVSST  60
RVIWATAAAA ALLRFAGASA NPGAGDDNLS DLPTIQGISD WSWNSADQNK ISGGGWTAPE  120
KRTASDARDS ARRMDRAGSY ISSYKSADFT SELQAPSGPR EEEKPSAVGE SASAAKREKF  180
RGVRQTALGK WSARICHSKE KKKMQVWLGT FDTPEEAARA YDIAAIDLHG LSAKLNFPDA  240
VAPVPGSAAA AKAANVP*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A4e-13169238472Ethylene-responsive transcription factor ERF096
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A2R6VZS90.0A0A2R6VZS9_MARPO; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP6161718
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G47520.13e-18ERF family protein