PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Mapoly0229s0008.1.p
Organism
Marchantia polymorpha
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Marchantiophyta; Marchantiopsida; Marchantiidae; Marchantiales; Marchantiaceae; Marchantia
Family Trihelix
Protein Properties Length: 280aa    MW: 31673 Da    PI: 8.6424
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Mapoly0229s0008.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix43.68e-141899176
             trihelix  1 rWtkqevlaLiearremeerlrrgk.......lkkplWeevskkmrergferspkqCkekwenl.nkrykkikegekkrtsess 76
                         rW k+e+l L++a+r+ +e +r++        +   +W+ vs+++++ g++r++ +C+  w+n+ + +y++i++++k +  +++
  Mapoly0229s0008.1.p 18 RWDKHETLILVTAKRKQNEGIRDAGmrsrkfgSPDERWDLVSSYCQANGVHRNARECRRQWNNMfHSDYRRIRNWQKLN--DVE 99
                         8**************99999997533444555999****************************8578*********984..444 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500906.7371182IPR017877Myb-like domain
SMARTSM007170.00481584IPR001005SANT/Myb domain
PfamPF138371.0E-717101No hitNo description
Sequence ? help Back to Top
Protein Sequence    Length: 280 aa     Download sequence    Send to blast
MDVNMQAAQE ERTNRHPRWD KHETLILVTA KRKQNEGIRD AGMRSRKFGS PDERWDLVSS  60
YCQANGVHRN ARECRRQWNN MFHSDYRRIR NWQKLNDVES FWTMSKDQRK EHQLPLTFYR  120
EVFAEIESFL GRKPSFSTTS GAAQDFSRPP RDETAVSDDS PSDQNITEPL QSGSCGGEEL  180
TTSSGKNGNA HEHAGRNKRK VVVANAGGER DNLKEELASV LESSGRAIQR ALSDKIRSQI  240
EADNRNSELD RSQRKEHGDS LIGVLGSLAC ALGRIADKM*
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A176VPK20.0A0A176VPK2_MARPO; Uncharacterized protein
TrEMBLA0A2R6VZN30.0A0A2R6VZN3_MARPO; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP17471336
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G33550.12e-34Trihelix family protein