PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Mapoly0359s0001.1.p
Organism
Marchantia polymorpha
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Marchantiophyta; Marchantiopsida; Marchantiidae; Marchantiales; Marchantiaceae; Marchantia
Family C3H
Protein Properties Length: 215aa    MW: 24104.9 Da    PI: 8.8027
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Mapoly0359s0001.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH21.73.5e-07167192127
                          --S---SGGGGTS--TTTTT-SS-SSS CS
              zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                          +kt lCr f   G+C++G+ C +aHg+
  Mapoly0359s0001.1.p 167 FKTQLCRKFVS-GFCRRGNLCDYAHGE 192
                          69********9.*************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.1370.104.6E-578150IPR004088K Homology domain, type 1
PROSITE profilePS500849.26779148IPR004088K Homology domain, type 1
CDDcd001053.50E-481144No hitNo description
SuperFamilySSF547911.52E-581150IPR004088K Homology domain, type 1
Gene3DG3DSA:4.10.1000.106.0E-14162197IPR000571Zinc finger, CCCH-type
SuperFamilySSF902297.06E-8163197IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.925166193IPR000571Zinc finger, CCCH-type
SMARTSM003562.1E-5166192IPR000571Zinc finger, CCCH-type
PfamPF006423.6E-5167192IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003723Molecular FunctionRNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 215 aa     Download sequence    Send to blast
MTQHLSDEQL TPVWEGNDDL AVLMDLILQN QLQPGMDHRT LPRVEIMYAP FPESVKNEFN  60
GFNFPEAATI HLATTVQATS IIKVPIYAAF GGAIIGKRGV NAKRICNEAG LRKLSIQNHS  120
AFPHLKYLIM EGSVKVLCAA IRRVNVLIKN ETLAGKLCDW RIRHAFFKTQ LCRKFVSGFC  180
RRGNLCDYAH GEHEIRAVGT YFPKTDELGS KYTE*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A176VV721e-160A0A176VV72_MARPO; Uncharacterized protein
TrEMBLA0A2R6VYV71e-160A0A2R6VYV7_MARPO; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP10261756
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G12130.13e-19C3H family protein