PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Mapoly0721s0001.1.p
Organism
Marchantia polymorpha
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Marchantiophyta; Marchantiopsida; Marchantiidae; Marchantiales; Marchantiaceae; Marchantia
Family LBD
Protein Properties Length: 126aa    MW: 13844.8 Da    PI: 9.1226
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Mapoly0721s0001.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF26077.13.1e-2417771070
               DUF260 10 rkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearar 70
                          kC ++C++apyfpa+qp +f +vhk++Gasnv+kll+alpe+ r da++slvyeAear++
  Mapoly0721s0001.1.p 17 CKCMAKCIFAPYFPADQPLRFLYVHKMYGASNVTKLLHALPESSRADAVASLVYEAEARVK 77
                         49*********************************************************86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089112.4227108IPR004883Lateral organ boundaries, LOB
PfamPF031951.7E-221879IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 126 aa     Download sequence    Send to blast
MREILQAGAR YPTPRPCKCM AKCIFAPYFP ADQPLRFLYV HKMYGASNVT KLLHALPESS  60
RADAVASLVY EAEARVKYSI RVTDVIAPSG AQEKSYGTRE TSKLFRGEEA RETDSGPSGP  120
PIPHQ*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A2e-2118772180LOB family transfactor Ramosa2.1
5ly0_B2e-2118772180LOB family transfactor Ramosa2.1
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023531527.13e-24LOB domain-containing protein 4-like
TrEMBLA0A2R6VYH73e-87A0A2R6VYH7_MARPO; Uncharacterized protein
STRINGXP_009361815.11e-21(Pyrus x bretschneideri)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G66870.13e-22ASYMMETRIC LEAVES 2-like 1