PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Mapoly0817s0001.1.p

Organism

Marchantia polymorpha

Taxonomic ID

3197

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Marchantiophyta; Marchantiopsida; Marchantiidae; Marchantiales; Marchantiaceae; Marchantia

Family

LBD

Protein Properties

Length: 298aa MW: 33249.6 Da PI: 8.4054

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Mapoly0817s0001.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	103.8	1.5e-32	27	125	1	100
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleql 90 aCaaCk++rrkC+ dC lap fp +qp++fan+h+lFG++++l+l+++ +++ d+m+s+++e++ar rdPv+G++g++++l+++ + l Mapoly0817s0001.1.p 27 ACAACKFQRRKCTVDCLLAPWFPPHQPRRFANAHRLFGVAHILRLIQE-NKNSVGDLMKSVCFESDARERDPVHGVYGILRRLKREADIL 115 7*********************************************.88899********************************99 PP DUF260 91 kaelallkee 100 +++ ++l e+ Mapoly0817s0001.1.p 116 EEHRSTLAEK 125 9998887765 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	19.401	26	126	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	1.1E-29	27	121	IPR004883	Lateral organ boundaries, LOB

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009556	Biological Process	microsporogenesis
GO:0009786	Biological Process	regulation of asymmetric cell division
GO:0005634	Cellular Component	nucleus

Sequence ? help Back to Top
Protein Sequence Length: 298 aa Download sequence Send to blast
MEQFHGLTPQ VSGVQVSSRM GFPPNGACAA CKFQRRKCTV DCLLAPWFPP HQPRRFANAH 60 RLFGVAHILR LIQENKNSVG DLMKSVCFES DARERDPVHG VYGILRRLKR EADILEEHRS 120 TLAEKLRILK AEDAAAQTPA LFAPAYNGNH PETYYGHARP TQHVAPTQQV SFPENGGFHF 180 FAPIQQVTFP KNGGFHMQHQ VAFQDNGGFH MQQQHQETDM YQLQQQMNLF GGGGFTPVQL 240 TGAPMQLTDR STSMQLTDRT MVTHGNHNTV VPASGDIFPA SRLCLDLFTD SRSSRIV*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	4e-21	28	118	12	103	LOB family transfactor Ramosa2.1
5ly0_B	4e-21	28	118	12	103	LOB family transfactor Ramosa2.1

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
TrEMBL	A0A2R6VYD5	0.0	A0A2R6VYD5_MARPO; Uncharacterized protein

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G47870.1	7e-27	LOB domain-containing protein 27

Link Out ? help Back to Top
Phytozome	Mapoly0817s0001.1.p