PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Mapoly0874s0001.2.p
Organism
Marchantia polymorpha
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Marchantiophyta; Marchantiopsida; Marchantiidae; Marchantiales; Marchantiaceae; Marchantia
Family MYB
Protein Properties Length: 580aa    MW: 64320.5 Da    PI: 7.0862
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Mapoly0874s0001.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding42.61.4e-131462148
                         TSSS-HHHHHHHHHHHHHTTTT.-HHHHHHHHTTTS-HHHHHHHHHHHT CS
      Myb_DNA-binding  1 rgrWTteEdellvdavkqlGgg.tWktIartmgkgRtlkqcksrwqkyl 48
                         +g+W+++Ed +l+  + q G+g +W t +++ g++R++k+c++rw +yl
  Mapoly0874s0001.2.p 14 KGPWSPDEDAKLKAFIDQNGTGgNWITLPSKAGLKRCGKSCRLRWINYL 62
                         79*********************************************97 PP
2Myb_DNA-binding45.81.4e-1469111246
                          SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
      Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                          g++T++E+ l++++++  G++ W++Ia++++ gRt++++k++w++
  Mapoly0874s0001.2.p  69 GSFTEDEETLIYKLHASIGSR-WSLIAAKLP-GRTDNDIKNYWNT 111
                          78*******************.*********.***********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129413.225962IPR017930Myb domain
SuperFamilySSF466892.64E-2511109IPR009057Homeodomain-like
SMARTSM007171.7E-91364IPR001005SANT/Myb domain
PfamPF002491.4E-111462IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.608.2E-211569IPR009057Homeodomain-like
CDDcd001672.43E-61662No hitNo description
PROSITE profilePS5129424.37863117IPR017930Myb domain
SMARTSM007174.8E-1467115IPR001005SANT/Myb domain
PfamPF002491.1E-1369111IPR001005SANT/Myb domain
CDDcd001672.74E-1070113No hitNo description
Gene3DG3DSA:1.10.10.602.9E-2470117IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 580 aa     Download sequence    Send to blast
MGRAPCCDKA NVKKGPWSPD EDAKLKAFID QNGTGGNWIT LPSKAGLKRC GKSCRLRWIN  60
YLRPDIKHGS FTEDEETLIY KLHASIGSRW SLIAAKLPGR TDNDIKNYWN TRLKKKLGEK  120
CLDQASSARF QRPSPPQQDS FTSERIDDVV PAPCKAPAAL NGLTAPSDGL LSPFLKPSHQ  180
QQQQQYSKLH DRTLLRDVAQ AQAQAQAQAL PPMTMQHQPQ PQPQPQPQQQ QQHQHNHQQH  240
QHQHQQQQQQ QVGLVKSEVP VVAAAMAAVG VVSTDGGADE DATRQLMRIE SSLRSCISSH  300
PSSHPSPASS CSGISTDRST YAPTGAQCAE SSYSECLSSG GFRDEQQQHC IQDPEAQLTA  360
ITSAASPTLL GHSSVIQADV GGRGAEVPAL EFEPRLADVA ALDDEMQAAL FVQDELSPAH  420
CRNLLGVVKA EDCNFDRYDW WGATTGIVAA PKHQPPARTL ISAAVKQQQQ QQQQQQHHHH  480
QHQQQHQHQQ QQQQQQQEQL QLQYLQLQYL QQHQHHRYGE PLSSTQLSLD EISMQCYMKP  540
SSWTLPAPSS CNGNANLISI ADYSNQIRLP WDSAWAETR*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A1e-24141177108B-MYB
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A2R6VYC40.0A0A2R6VYC4_MARPO; Uncharacterized protein
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G49690.12e-67myb domain protein 84