PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Mapoly1185s0001.1.p
Organism
Marchantia polymorpha
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Marchantiophyta; Marchantiopsida; Marchantiidae; Marchantiales; Marchantiaceae; Marchantia
Family LBD
Protein Properties Length: 166aa    MW: 18957.5 Da    PI: 6.3871
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Mapoly1185s0001.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF26096.52.9e-30899193
               DUF260  1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlka 92
                         aCaaCk++rrkC  dC+lap fp ++p++fan+h+lFG++ +l+l+ + +++  ed+m++++ e++ar +dPv+G +g++++lq+++e+l++
  Mapoly1185s0001.1.p  8 ACAACKFQRRKCLVDCPLAPWFPPDEPRRFANAHRLFGVASILRLIGQ-NKNSVEDLMKTICEESDAREQDPVNGQFGTLKRLQSEVERLEE 98
                         7**********************************************9.88999**********************************9986 PP

               DUF260 93 e 93
                          
  Mapoly1185s0001.1.p 99 L 99
                         4 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089118.6647107IPR004883Lateral organ boundaries, LOB
PfamPF031951.6E-28898IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 166 aa     Download sequence    Send to blast
MATHPLQACA ACKFQRRKCL VDCPLAPWFP PDEPRRFANA HRLFGVASIL RLIGQNKNSV  60
EDLMKTICEE SDAREQDPVN GQFGTLKRLQ SEVERLEELK SAWAEKLMIL LLEDAHPAYN  120
VGLSEPTQFA FTETTSYHMQ HQQQQQVHNM PQQHPAYNGS LSELNQ
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A1e-24910712112LOB family transfactor Ramosa2.1
5ly0_B1e-24910712112LOB family transfactor Ramosa2.1
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024374784.14e-34LOB domain-containing protein 7-like
SwissprotQ9LRW12e-25LBD22_ARATH; LOB domain-containing protein 22
TrEMBLA0A176WPW11e-121A0A176WPW1_MARPO; Uncharacterized protein
TrEMBLA0A2R6VY461e-122A0A2R6VY46_MARPO; Uncharacterized protein (Fragment)
STRINGPP1S13_89V6.12e-33(Physcomitrella patens)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP6016318
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G13850.18e-28LOB domain-containing protein 22
Publications ? help Back to Top
  1. Kim M,Kim MJ,Pandey S,Kim J
    Expression and Protein Interaction Analyses Reveal Combinatorial Interactions of LBD Transcription Factors During Arabidopsis Pollen Development.
    Plant Cell Physiol., 2016. 57(11): p. 2291-2299
    [PMID:27519310]