PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Mapoly1576s0001.1.p
Organism
Marchantia polymorpha
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Marchantiophyta; Marchantiopsida; Marchantiidae; Marchantiales; Marchantiaceae; Marchantia
Family GRAS
Protein Properties Length: 452aa    MW: 50098.4 Da    PI: 7.1082
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Mapoly1576s0001.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS391.96.8e-120864501373
                 GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlar.svselykalppsetseknsseelaalklfsevsP 89 
                          lv+lLl+cAeav++++lela+ +L rl+ ++ pdg+pmqRlaayf +AL+arl++ + s ++k l+  ++ +  ++e+l a+++f+++ P
  Mapoly1576s0001.1.p  86 LVHLLLACAEAVAEDNLELAKVILVRLRGHVLPDGNPMQRLAAYFEQALRARLTKeNNSPIFKGLTGDKSIP--QAEVLEAFSVFYDCIP 173
                          68*****************************************************77788888887776664..899999********** PP

                 GRAS  90 ilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefn 179
                          i kf+hlt+Nq +l+ave+e++vH++D++i +G+QWpa+lqaLa Rp+gpp+lR+ ++g     + +eleetge+L++ A++l+vpfef 
  Mapoly1576s0001.1.p 174 IGKFGHLTCNQILLDAVEKERTVHVLDLQIWHGMQWPAFLQALALRPGGPPKLRMSALGI----DLKELEETGEKLQECARNLHVPFEFC 259
                          ************************************************************....9************************* PP

                 GRAS 180 vlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfd 269
                          +l +++l ++e+++L++++gE+l+Vn+ +q h ll++  +l     ++L+ ++ l+P+vv ++e++ +hns+sFl+rf+e+l+yysa+fd
  Mapoly1576s0001.1.p 260 PL-VTELVQFEPSMLDMRRGEVLVVNSFVQFHCLLNKGPDLLT---KILRGLRMLNPRVVAFAENDGNHNSPSFLTRFVECLRYYSAVFD 345
                          *5.999*****************************88887777...9******************************************* PP

                 GRAS 270 sleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrve.eesgsl 358
                          +++a+lp++s +r+k+E+ + +++i+n++aceg +r+  het++ W++r+e+a F++ +ls++a++qa+lll+ ++s+gy+++ +e g l
  Mapoly1576s0001.1.p 346 AFDASLPPDSPARMKMEQIFAAQKIRNIIACEGPSRVDGHETMRYWHKRMETANFRNTSLSSRAVSQANLLLNLYYSNGYTLNtSECGYL 435
                          ***********************************************************************************4456777 PP

                 GRAS 359 vlgWkdrpLvsvSaW 373
                           lgW++ pL+ vSaW
  Mapoly1576s0001.1.p 436 ALGWHGMPLMGVSAW 450
                          8************** PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098560.95260430IPR005202Transcription factor GRAS
PfamPF035142.4E-11786450IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 452 aa     Download sequence    Send to blast
MTSAGLGGSY HNIEQPAFQY SRGPTAYGPN QSMASHSLQS SVGHQEQQQQ QQHPDIGRLH  60
LSGGHPGLSN ALPAPGSVMP ATGLQLVHLL LACAEAVAED NLELAKVILV RLRGHVLPDG  120
NPMQRLAAYF EQALRARLTK ENNSPIFKGL TGDKSIPQAE VLEAFSVFYD CIPIGKFGHL  180
TCNQILLDAV EKERTVHVLD LQIWHGMQWP AFLQALALRP GGPPKLRMSA LGIDLKELEE  240
TGEKLQECAR NLHVPFEFCP LVTELVQFEP SMLDMRRGEV LVVNSFVQFH CLLNKGPDLL  300
TKILRGLRML NPRVVAFAEN DGNHNSPSFL TRFVECLRYY SAVFDAFDAS LPPDSPARMK  360
MEQIFAAQKI RNIIACEGPS RVDGHETMRY WHKRMETANF RNTSLSSRAV SQANLLLNLY  420
YSNGYTLNTS ECGYLALGWH GMPLMGVSAW N*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A5e-819345126379Protein SCARECROW
5b3h_A5e-819345125378Protein SCARECROW
5b3h_D5e-819345125378Protein SCARECROW
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002977541.21e-146DELLA protein RGL2
TrEMBLA0A176WU480.0A0A176WU48_MARPO; Uncharacterized protein
STRINGEFJ215451e-150(Selaginella moellendorffii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP53661322
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G03450.12e-77RGA-like 2