PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Mapoly1803s0001.1.p
Organism
Marchantia polymorpha
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Marchantiophyta; Marchantiopsida; Marchantiidae; Marchantiales; Marchantiaceae; Marchantia
Family LBD
Protein Properties Length: 259aa    MW: 28330.3 Da    PI: 10.347
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Mapoly1803s0001.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260129.71.2e-4013111199
               DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleql 90 
                          +CaaCk+lrrkC+++Cv++pyfpa+qp kfanvh++FGasnv+k+l++lpe+ r da++sl++eAear++dPvyG+ g i+  q+++++l
  Mapoly1803s0001.1.p  13 PCAACKFLRRKCTAECVFSPYFPADQPLKFANVHRIFGASNVTKILQDLPESSRADAVTSLAFEAEARMKDPVYGCSGAISLTQRRIKEL 102
                          7***************************************************************************************** PP

               DUF260  91 kaelallke 99 
                          ++e+++l +
  Mapoly1803s0001.1.p 103 QEEVQELTD 111
                          ***998765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089125.0112113IPR004883Lateral organ boundaries, LOB
PfamPF031955.2E-4013109IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 259 aa     Download sequence    Send to blast
MSHTSGASSS SSPCAACKFL RRKCTAECVF SPYFPADQPL KFANVHRIFG ASNVTKILQD  60
LPESSRADAV TSLAFEAEAR MKDPVYGCSG AISLTQRRIK ELQEEVQELT DQSPVWPPAA  120
FLASATLRSL TREQQFKSWG ASRIYISVGL HRRDLTLLVI TGRVSCSAGE NATVSATASY  180
STTMSTIRRT AQRSTARTRS MTMKTTTNTE VMLIDKSGIM TKTADMHVTE MERRSKRKEA  240
TAPRSGTKDA ILTSLQRT*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A7e-4791067104LOB family transfactor Ramosa2.1
5ly0_B7e-4791067104LOB family transfactor Ramosa2.1
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1187193RRTAQRS
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A2R6VXT70.0A0A2R6VXT7_MARPO; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP6016318
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G27650.14e-48LOB domain-containing protein 25